Basic Information

Insect: Timandra comae
Gene Symbol: -
Assembly: GCA_958496195.1
Location: OY292368.1:607425-609350[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.9e-09 5.7e-06 26.6 0.1 5 39 22 56 21 59 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.9e-09	5.7e-06	26.6	0.1	5	39	22	56	21	59	0.91

Sequence Information

Coding Sequence: ATGCCTAGAAATTATCGACCCAAACCGGGAGCGAAATCTCTTAAAAAACATGACGTAGTCATAATTAATCAAGCTTTACTAGACATATCAGCTGGAAACACATCGATACGACGTATTGCTGAGAAATATGGAATTTCATATTCAGTTTTACAGAGACGCAATAACAAATCAGTGAAACCCCATGGTGGCCAAACGGCAATGACGCCAGAGGCCGAGgcttttattgtaaaaaatttaaatatttgtgcgGATTGGGGTTATCCGCTGGACCAAAACGATTTAAGAtatattgttaaaatgtaTCTTGATACATCAAACATTACTGTGAAAAGGTTTAAAAACAACTATCCAGGGCCTGATTTTGTTGAGAGCTTTCTGAAACGACATAGTGACAAAATATCAAAGCGGATATCTCAAAACATCAAACGTTCGAGAGCAGAAGTGTCACCTGAAATGATGAAAACCTACTTTGCAGAACTAGAAAAGTCACTTGAAGGCGTACCTCACTCTAACATAGTCAACTACGACGAAACAAATTTATCAGATGACCCTGGGCGACCAAAAGTCATCGTTCGGCGTGGATGTAAGTATCCAGAAAGGGTCCGGAATTTTTCAAAAGGGTGTACGTCTTTGATGATTGCAGCAAACGCTGAAGGAGAACTATTGGTGCCTTATGTAGTGTATAAGTCAACCTACCTTTACGATACTTGGATAAAAAATGGCCCAAAAGGAACCTGCTATAACAGGTCGAAATCTGGCTGGTTTGATGGAGAAATCTTTAGTGATTGGATCACAAATGTCATTATTCCatattttgacaaaaaaaccGGTAAAAAACTTCTTATAGGTGACAACTTATCGTCTCATCTTTCAGCGCATTTAATAGATCTGTGTAAAGAAAAGGACATACACTTTGTGTTTTTGCCACCAAATTCCACTCATTTGACCCAACCACTAGATGTGGCTTTCTTCCGACCTATGAAACAGGCATGGCGGAGTATTTTGCAGAAGTGGAAAGAAACTGATGGACGGAATTTAAGCTCCATTCCAAAGGGATGTTTTCCTCGCCTTTTGAAGCTATTGATCAATCAGCTTAATATTAACGCTAAATCCAATATACGTTCtggttttaaaaaaactgGTATTGTTCCTTTAAATAGTGAAGAAGTCATATCTCGCCTTCCAAATGCCGAAATTGATGAGACTGCCCCAGATGCTGTGAACGAGTCATTTGTGaagtatttaaaagaaatgcgTTATGGAACTTTGGATATTACTGAAccaaagaagaaaaagaaattaaatgttGTAGCTGGTAGAAGTGTGTGTCCGGATGAATTAAATAGTGAAAATAGACCCGAAGAAGATGAGCAACAAACTACAAGCAATATTGTATCAGTGCAGAAAAAAAAAGGATTAGGAAAAAAGTCCAAACCGCAATCTTCAAACAGTCGCGTTATTGAAAAATTTATTCCTTTGTCCCTAAATACACAAATACCTCTAAATCCATCAATCAGTAGTACTAGCACTTCCACTATGAATGAGATTCTTGACATGGATATAGAATCGATACCTATTGTTTTCGAGGATGATCTATTAGTTGGAAGAGAAGAAATTTTGATAGAACAGACAGAAACGGAACAAGACACAAATGTAGACAAAGATGTCAGCATTCAAcaagtaaacaaaaaagagGCTATAAAGGAGTTTAAGGTCAAAATATTATCTGACGAAATAGTTACATCGAATCGTATTcttacaaagaaaaagaagacagaacataaaaatatggtgTCCACAACAAAAAAACCCAAACTGTTTTTTACTCCAAATGCAGCTCCGATCCCAAGCCGAAGAGGTTCGGAAGTGagtttaaattactttaataatgcTGAAGAAATTATGAAGATTTTAGAAGAAGAGTAG
Protein Sequence: MPRNYRPKPGAKSLKKHDVVIINQALLDISAGNTSIRRIAEKYGISYSVLQRRNNKSVKPHGGQTAMTPEAEAFIVKNLNICADWGYPLDQNDLRYIVKMYLDTSNITVKRFKNNYPGPDFVESFLKRHSDKISKRISQNIKRSRAEVSPEMMKTYFAELEKSLEGVPHSNIVNYDETNLSDDPGRPKVIVRRGCKYPERVRNFSKGCTSLMIAANAEGELLVPYVVYKSTYLYDTWIKNGPKGTCYNRSKSGWFDGEIFSDWITNVIIPYFDKKTGKKLLIGDNLSSHLSAHLIDLCKEKDIHFVFLPPNSTHLTQPLDVAFFRPMKQAWRSILQKWKETDGRNLSSIPKGCFPRLLKLLINQLNINAKSNIRSGFKKTGIVPLNSEEVISRLPNAEIDETAPDAVNESFVKYLKEMRYGTLDITEPKKKKKLNVVAGRSVCPDELNSENRPEEDEQQTTSNIVSVQKKKGLGKKSKPQSSNSRVIEKFIPLSLNTQIPLNPSISSTSTSTMNEILDMDIESIPIVFEDDLLVGREEILIEQTETEQDTNVDKDVSIQQVNKKEAIKEFKVKILSDEIVTSNRILTKKKKTEHKNMVSTTKKPKLFFTPNAAPIPSRRGSEVSLNYFNNAEEIMKILEEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01439881;
90% Identity: iTF_01439881;
80% Identity: iTF_01443773; iTF_01443774;