Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 4.4e-17 3.6e-14 52.8 0.0 1 43 31 74 31 76 0.95

2 2 2.8 2.3e+03 -1.0 1.1 6 15 166 175 162 179 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	4.4e-17	3.6e-14	52.8	0.0	1	43	31	74	31	76	0.95
2	2	2.8	2.3e+03	-1.0	1.1	6	15	166	175	162	179	0.83

Coding Sequence: ATGCAGCATCTGTGGCAGCAGTGCTGGAACACCAACCAGAATATGGTGCAGAACCTGCGTCTGCGAGAGCGAGGCCCGTTGAAATCCTGGAGGCCTGAGACAATGGCCGAAGCCATATTCTCCGTCTTGAAGGAGGGACTGTCGCTATCTCAAGCAGCACGGAAATTCGACATCCCATATCCAACTTTCGTGTTGTACGCCAATCGAGTGCATAACATGCTTGGTCCCAGCGCCGACGGCGGAGCAGACCTGAGGCCAAAAGGACGAGGCCGGCCCCAAAGAATTCTGCTGGGTGTGTGGCCCGATGACCACATCCGCGGAGTGATCCGCGCGGTGGTGTTCCGCGAGAATCACGCGCAACACACGCCTCATCACCTGCGAGAGATAGATATGCCCATTTACCCGGCGATCACGGAAAATCCAGCGACACAAAACTCGGTGGGCGGGAACGGGTGTGGCGGGCGCGAGGGCCGGCTGTCACCAAACGCGGCTGCAGCGGCCGCTGTCGCTGCTGTCGCCCACGGACTGCGCCAGCAAATGTGCAACATGGTGGTGGCTGCGCAGCGGCCCACCGAACAGGGCGCTCAGGTGGCATTGCCGCCGTTGCCATTGCACTCGCCGCGACTGCCCTCGCCGATATCCACCGGACTCGAGTCACCGCTGACCTCCCCGCCGCCGCCCGGGCTGGCGATAGCGGCGTCGACACCGTTCCGCCCGTTTGCCTCACCGCCGCACTTTGAAACGAGCTCGGGCGAAATGCGCCCGCCCAGGACACCGATAAACCGTAACGGACAGGGCGCTTCGCCCGTGGAGGCTGAGAACCCCCCGATCAACGACCGGTCGCGTCTCGACATCTGA
Protein Sequence: MQHLWQQCWNTNQNMVQNLRLRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDDHIRGVIRAVVFRENHAQHTPHHLREIDMPIYPAITENPATQNSVGGNGCGGREGRLSPNAAAAAAVAAVAHGLRQQMCNMVVAAQRPTEQGAQVALPPLPLHSPRLPSPISTGLESPLTSPPPPGLAIAASTPFRPFASPPHFETSSGEMRPPRTPINRNGQGASPVEAENPPINDRSRLDI

Sequence clustering based on sequence similarity using MMseqs2