Taur024986.1
Basic Information
- Insect
- Tiliacea aurago
- Gene Symbol
- -
- Assembly
- GCA_948098905.1
- Location
- OX402606.1:2003287-2051043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.35 29 6.0 0.5 1 23 533 555 533 555 0.94 2 11 0.69 58 5.1 1.4 1 23 559 581 559 581 0.93 3 11 0.00079 0.066 14.3 0.6 1 20 588 607 588 609 0.94 4 11 0.0065 0.55 11.4 1.0 2 21 616 635 616 636 0.92 5 11 0.00022 0.019 16.1 0.6 2 23 652 673 651 673 0.94 6 11 0.00037 0.031 15.4 0.1 1 23 678 700 678 700 0.98 7 11 0.12 10 7.4 4.5 1 21 709 729 709 734 0.91 8 11 3.4e-05 0.0029 18.6 2.3 1 23 742 765 742 765 0.93 9 11 0.007 0.59 11.3 0.4 1 23 771 794 771 794 0.94 10 11 0.024 2 9.7 0.3 3 19 807 823 805 824 0.89 11 11 0.049 4.1 8.7 0.9 1 23 837 860 837 860 0.97
Sequence Information
- Coding Sequence
- ATGAAGGAAGTTAACATAAATATAGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTGAATTACAATCGTCGAATGTTTTATCACCCCAACGTAAAAGAATGTTTACGTTTGCTCGGGAATATCGATGTTCCAGATGGCCTTGAAGTCAAAGTCTGCTGGGAATGCCTGGCGCGCGTCAACTCTGCTATCAACTTCAGGGAACAGATGCTCAAATCTTACGACTTTCTTATCTCGTACTCTAAAGAGCATACATTCTTGGACTCTCCGAATGACTTCGACGCTCACGCTACCACCAACATAGAGAGAACGGACGTGGAGTGTTATGAGTGTGTGCTAGAGACAGAAGTGGTGGAGGAGAAGGAGATAGACGTTGATGTTAAGGAGGAAGAGGAAATTGCGGATAAGTATGGTTTTGAGGTGGCCATAAAAGAAGAATCGTTTGACGAGCCATACTTCCAAGATGTGCCAGCTGTTGACAATGACATCACATCGGATGAAGATGTGCAGCTTTCTAAACTTAAACAGAAAGAGACGGAGAAAGGGAAGAAGAAGAGAAAGAGCGAGAAGAAGAAGGAAAGGGAGAGGGACAGGATGCCAGCCAACAAACGACCGAGAAAGACTACACGAGGTCTCTATGACATATCACAGTTTGAAGCTGCTTATGACCAAATTGTCAATCACGGGATGTCAGTACGACAAGCGGGCAAAATGTTTAATATCACACACGTGACCCTTCAAAGGTATAAGAAAAGACGACAAAACACAAATTTTCCCGTCAAAGTGGGCTATGCACGTAACAGTTTTTATAACACAGAACAAGAATCTCTGTTAACGGAATACTTGAAAAAATATGCGGATATATATCCCGGGTTATGCGTGAAGGTAGTCAGAAAGTATGCTACGGAATTCAGCCAGAAACTGGGTTTGAAAACTCCAAAGCCTTGGGTGGATAATGATATGGCTGGCATCGATTGGTACAAGAATTTTATGTACAGAAATAAAGCTTTAGAAGATAAAATGGATCGGCAAACTGCCAAAGAAAAAGTTCGAGTTTTTTATGATCGATTGTGGAGTATTTTATGCCAGTATAACTTTGGTTCTGAAAACATTTACTCTTTAGACGAAATTGGAGTTAATATTGAAGAATTTAGAGATAAAATTTGGTTGATGACAACGAAAAATGGTCCAATAGCTTTGAAAGAGTCTAAAGTTATGTTCACTTATGCAGCCAACGCTAAAGGATATGCGCTAAACTCCGAGGATGCAATGAGTCGATATCAAGACACAATAAAAAAAAAAGATTTGATGGCACTTAAAGTGGATTCCCCAAAACGCCAGAAGACTAAGAAGGATAAAAACCCCGAAAAGAAGAGTAGGAAGCTAAAGAATCTACCAGAAGAGTTAGTAGAACTGTACACAATGAGCAAAGAAGAAATGTGGCTTATCAGAATCGAGGATCTCAACAGCAAGGAGTTTCAGAAGCTCAAGTATAGCCAGTCAGCCATTTTTCCTGACTGCTGCTACCGACGCGTACGCGCCAATGAACATGCAGCAGCTAGTGACGTAACTAAATATAAAAGCGAAGACTGCCATCAATGCTCAATATGTCAAGCCTATTTCTTAACTAAAGACAATGTGGCCGCACACAAAGCGTTACACCAACAAGGCTATAAATGTCGGGAGTGTGGCTTCAATACTACGCTGAAGAGACGTATGTTGAAGCATGTTGGAAGTCACGCGCCGAGTGGAGATGCTCATGTGTGTCAGACTTGTGGGGGTAGCTTTAGCACAAAATCGAAGTTAACATATCACCGTGGCGTGTGTTGTCAAGAAAGGCCGCAGTGCGACTGTTGTGGCAAAGTATTCGCCAACAAAATGACCCTGAAGTACCACCTCAAAATCCTGCCACAGAATAAAGATGACAAACCTAAGGAGAAGTTGTTCATACCGTGTAAAGGCTGTGACAAAGTGTTTCATTCAAAGAAGAGTTATAGAGCGCATGTTGTCATCCACGACGGCCTAACCTACCCGTGCCCGATTTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACGCGCGCAACCACCGCGAGCGCCAGGCGGGCAACTTGCACGAGTGTCGCCCTTGCAGCAAGACTTTCGCAAGTAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAACACGTGTCGCAGGATGCTTTCCCACACGAATGTAACTACTGCGGAAAGAAATTCGCTACAAAATGGTGTCTCACCGACCACATCGACTGGGATCACTTGAAGAAAATCAAATATCAATGTAGCTTCTGTTTTAAGGCATTCAAAACTGCGAAAATATTGGTGGCTCATGTCAATAATATACACGAGGGTAAGAAAAAAGAAGCGGAGGGTGAACATCTATGTGAAATATGCGGGAAATCGTACAGGACAGTAAAACGCCTAAAGGGACATGTGTGGGCGATGCACACAAAGCGGTCAAGCAGCAAGATATACAAATGTAAGCTGTGTCCGGCGACGTTCATGTGGCAGACTAGCATATACAAGCATATGAAGATGATGCACGACAATAATAAGAAGAGTAAGACACCTCGCGTCGTCCAGCCTGTGAAGAAAGAGGATCCCTATCCCGGAATCGAACTAGCGAACCGAATGCAGTACTTCCAACAGAACATTGGCGGCAACTTAAATATAGTTCACATACAACCTTTGGGAATGACTCAGAATATTGTTTAG
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYNRRMFYHPNVKECLRLLGNIDVPDGLEVKVCWECLARVNSAINFREQMLKSYDFLISYSKEHTFLDSPNDFDAHATTNIERTDVECYECVLETEVVEEKEIDVDVKEEEEIADKYGFEVAIKEESFDEPYFQDVPAVDNDITSDEDVQLSKLKQKETEKGKKKRKSEKKKERERDRMPANKRPRKTTRGLYDISQFEAAYDQIVNHGMSVRQAGKMFNITHVTLQRYKKRRQNTNFPVKVGYARNSFYNTEQESLLTEYLKKYADIYPGLCVKVVRKYATEFSQKLGLKTPKPWVDNDMAGIDWYKNFMYRNKALEDKMDRQTAKEKVRVFYDRLWSILCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVMFTYAANAKGYALNSEDAMSRYQDTIKKKDLMALKVDSPKRQKTKKDKNPEKKSRKLKNLPEELVELYTMSKEEMWLIRIEDLNSKEFQKLKYSQSAIFPDCCYRRVRANEHAAASDVTKYKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGSHAPSGDAHVCQTCGGSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHARNHRERQAGNLHECRPCSKTFASRDCYNNHMRLSKKHVSQDAFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKTPRVVQPVKKEDPYPGIELANRMQYFQQNIGGNLNIVHIQPLGMTQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441431;
- 90% Identity
- iTF_01439859;
- 80% Identity
- iTF_01439859;