Tlin027485.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010704.1:8607-17066[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 40 5.4 0.0 21 44 489 512 481 520 0.85 2 10 0.0061 2.2e+02 3.0 0.0 21 44 517 540 514 548 0.86 3 10 0.013 4.5e+02 2.0 0.0 21 44 545 568 542 576 0.82 4 10 0.0051 1.8e+02 3.3 0.0 22 44 574 596 571 606 0.83 5 10 0.036 1.3e+03 0.6 0.0 21 43 601 623 599 628 0.86 6 10 0.009 3.2e+02 2.5 0.0 21 44 629 652 626 660 0.85 7 10 0.015 5.1e+02 1.8 0.0 21 44 657 680 653 688 0.83 8 10 0.28 1e+04 -2.3 0.0 23 46 687 710 684 714 0.76 9 10 0.0031 1.1e+02 4.0 0.0 21 44 714 737 711 745 0.86 10 10 0.011 3.8e+02 2.3 0.0 21 43 742 764 739 772 0.86
Sequence Information
- Coding Sequence
- ATGGAGCGTCGTCAGCACGCAGACGCTGTGCCCGTTGACAATATCCAATTGTGCAGAATATGTTTGGCCACAGACTGCAAACTGTACTCAATGACATCTACGGTTTTGAATGAGGCATATGAGACATTAACTGGAATCatgACAGCAGACGAAGAGCACTTGCCTCGGCTCCTGTGCTCCCAGTGTGCCGACCGACTGATGAACTGCGCTCGCTTCAGGCGCAGGAGCTTGCAAGCGCACTCCATGCTTCTGGACATCCTCAGGAGACACGGACAAATAACTGTAGAGTTAATACAATCTGTTATGGCAATCTATAATCCATTCAGTTCTGATCCAGTAGACAATCCTAACAAAGATTTAGAGGAAGTAAATAAGTTGACAGACACAGAATGTGACACTAACAGCGACAATATTGATAGAtatgaaaatattgattgttttaAGACTGAAACTGATAATGTTGATGACAGTCATATTAATAGTGAAGATGGAACAAATAATGTAGCTGTCAATAAGGTTAAGACAGAAGCTGATGACGATTTAGACAGTCGAGAGGatcttaatacttgttcatacaaCCTGCGGGTAGAAATTATACCAGAGAATAATGCGACCAATGTAGACGATCTTATCAAGACAAGTGTATGTTCATATAACTCCGAGAACAAAATGGCTGTTAATgttaacactaaaaatattgttgacATTATTAATGAAGACATAGTGAATGATGAAGTTACTTCCAACAGGAGCTTGGTGTATTCGGTCGATGAAAATACTGTTAATGTTGTTAAGATGGAATGCAGTGAGGACGGTTGTCCTGAGCTTGAACAATCATCCAGTGATTGTATGGAGGATATACACGCGGTTGTACCTGCAGGAGAAGTAGTTCTGCACGATGCTCTGTCTACACAAGAAGTGAGGAAAACAACCGAGAAAATGAATAAGACTCCGCAAGATTTGAATGAAGCGAAGATTATCAAACAACAGACACCGGCAGCTGACGGACCCTCCACAGATGATACGTTACGTTGTGACATATGTAATTATCAAACTGACAGCGATGTTCAGTTGCTGGAACATTTGAAAGCGCATGCTGCAGCAATGAAGTCATTTCACTGTAATATGTgtgattataaaacaaataaaaggaGTCACCTTATTCGTCATCTCCGAACACATTCTGGCGTTAAAGAATATTTCCAAAATGTTATCAAGAAAATACTGTATTGCGATATGTGTGATTATAAAACGGATCGTAGGAATTGTCTTATTTCTCATCTCCGGACACATTGTagtgataaagaatatttttgtaacgtttgtaaaaaaagatttaattgtAAACGCTTAGTTGCTTTGCATATGAGAATACATTCTAGGGAAGAAGTATATtcttgtgatatttgtaacaaaatgtttggtCGCAAGGGGAGCCTACAAAATCATCGATTAATACATTccgatgagaaaccatattcctgtgatgtttgtaacaaaatgtttcgGCAAAAGGGGCATCTACAAACACATCAaatcatacattccggcgagaagccatattcctgtgatgtttgtaacaaagtgtttggtTACAAGTGGCAACTACAaagacatcaattaatacattccgatgagaaaccatattcgtgtgatgtttgtaacaaaatgtttggtCGCAAGTGGAACCTACAAAATCATCAATTAATGCATTCTGAtaagaaaccatattcctgtgatgtttgtaacaaaatgtttcgGCAAAAGGGGCATCTACAAACACATCAaatcatacattccggcgagaagccatattcctgtgaagtttgtaacaaaatgttttcgCAAAAGGGGTATCTAAAAGCACATCAAATCATACATTCCgacgagaagccatattcctgtgatgtttgtaacaaaatgtacGGACGTAAAAGGGACCTGAAAAGTCATCAGatcatacattccggcgagaagccatattcctgtgatgtttgtaacaaaatgttcggtcgcaagtgGAACCTACAAAATCATCGATTAATGCATTCTGAtaagaaaccatattcctgtgatgtttgtaacaaaatgttcagtCGAAAGGAGTACCTACAAAGTCATCAATTATTAATACATTCTGATgaaaaaccatattcctgtgatgtttgtaacaaagtgtttggtaACAAGTGGGACCTACAAAGACATCAGTTCATACATTctggcgagaagccatattcctgtgatatttgtaacaaaatgttcggtcgcaagtgGGGCCTACAaagacatcaattaatacattctgACAGTCCACACGAGGTCGTGTACTATCAGTACTATCACACACGGACGACCCCGTCCGCGCCAGCGAGTGCCACGACTGTGAACCAAGTCAGACTATCCGAGCGCAATACAATGGGTAATGGGGTCCATGCAACCCATGCAGTTGCAGTGGAAGACATGCTTTGA
- Protein Sequence
- MERRQHADAVPVDNIQLCRICLATDCKLYSMTSTVLNEAYETLTGIMTADEEHLPRLLCSQCADRLMNCARFRRRSLQAHSMLLDILRRHGQITVELIQSVMAIYNPFSSDPVDNPNKDLEEVNKLTDTECDTNSDNIDRYENIDCFKTETDNVDDSHINSEDGTNNVAVNKVKTEADDDLDSREDLNTCSYNLRVEIIPENNATNVDDLIKTSVCSYNSENKMAVNVNTKNIVDIINEDIVNDEVTSNRSLVYSVDENTVNVVKMECSEDGCPELEQSSSDCMEDIHAVVPAGEVVLHDALSTQEVRKTTEKMNKTPQDLNEAKIIKQQTPAADGPSTDDTLRCDICNYQTDSDVQLLEHLKAHAAAMKSFHCNMCDYKTNKRSHLIRHLRTHSGVKEYFQNVIKKILYCDMCDYKTDRRNCLISHLRTHCSDKEYFCNVCKKRFNCKRLVALHMRIHSREEVYSCDICNKMFGRKGSLQNHRLIHSDEKPYSCDVCNKMFRQKGHLQTHQIIHSGEKPYSCDVCNKVFGYKWQLQRHQLIHSDEKPYSCDVCNKMFGRKWNLQNHQLMHSDKKPYSCDVCNKMFRQKGHLQTHQIIHSGEKPYSCEVCNKMFSQKGYLKAHQIIHSDEKPYSCDVCNKMYGRKRDLKSHQIIHSGEKPYSCDVCNKMFGRKWNLQNHRLMHSDKKPYSCDVCNKMFSRKEYLQSHQLLIHSDEKPYSCDVCNKVFGNKWDLQRHQFIHSGEKPYSCDICNKMFGRKWGLQRHQLIHSDSPHEVVYYQYYHTRTTPSAPASATTVNQVRLSERNTMGNGVHATHAVAVEDML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01439223;
- 90% Identity
- iTF_01439223;
- 80% Identity
- iTF_01439223;