Tlin027156.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010703.1:5850707-5868525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.18 13.2 5.1 1 23 285 307 285 307 0.98 2 13 0.19 18 7.0 2.4 1 23 315 338 315 338 0.91 3 13 0.05 4.8 8.8 0.4 1 23 342 365 342 365 0.93 4 13 0.0011 0.1 14.0 3.7 1 23 442 464 442 464 0.99 5 13 0.52 49 5.6 6.6 2 23 473 495 472 495 0.96 6 13 2.7 2.5e+02 3.3 3.3 1 23 499 521 499 521 0.96 7 13 0.0009 0.085 14.3 2.0 1 23 526 549 526 549 0.97 8 13 0.12 11 7.6 2.0 2 23 554 576 553 576 0.93 9 13 0.85 81 4.9 0.1 2 19 596 613 595 616 0.93 10 13 0.52 49 5.6 0.0 2 23 658 680 658 680 0.88 11 13 1.8e-06 0.00017 22.8 0.8 1 23 689 711 689 711 0.98 12 13 0.00091 0.086 14.3 1.4 1 23 717 739 717 739 0.96 13 13 5.6e-06 0.00053 21.2 2.6 1 23 745 768 745 768 0.98
Sequence Information
- Coding Sequence
- ATGAGGGATTTACAAGCATGTGCAATATGCTTGCGAACGAGGGTTAAATTGCATAGCATGTCTATCGGGACTTTACGAAATGATTACAATTCGATTTCAGGCCTCAagACTGCGAAAGGAAATGGGCTGCCTGAATACTTATGTATGGAATGCCtaacttacattaaaaaaattaagaaatttaaacaaaaatgtcATGAAGCTCATTTTGCTATGCTAGAATTGCTAAGTAAAAATAAAGAgATTGATGTATCCATACTAGAAGCATTTGACTGGAAACAGATTGGTATTGGCTccaatctgtcatttttaaaattagaaaatgtTCATTATGAAACAGTAAAGTTCAAATGGGTGCACCATAATCGATCATTATTAGAAAGGggtgaaaaaataaacatcCATCACTGTAGTACGATTGATACAGATGTCATTTTCGAAGTGCCCATAGAACCCGCAGTCAAATCAGTTGTGGAGAATGAGTTAGTAGCAAAAAAAGAAATCGTTGAAGAGAACATCCTTGATGAATCTTCTCACAtagatgataatgatgattatGATACTACAGAACCTTGTAAAACTTTACCCAATACTGTTGATGCAGAGAAAGATGATAATATAGAGATGCTTTTCGATAGCATCTTTGGCACGAATAGTGAAAAAGAACAACAAAGTGAAGACGAAGATGATAACTTAAGTAATGGTGTTAGTAAATCTGATGACCCACAAGTACAAGCAAATGATGACGTAGATGGGTCTCAAATGCACGAAGAGTATGCAACGATGATTGCCCTGTCCACGCAAGAGGTTAAGGCTGTTGTAGaagtttataaaatgtttgGCCAAGGAAAACATGAGTGCAATGTTTGCCAGAAGAAATATCACAATGAGAACCGTCTAAAAGTTCATATGCGTATGCATGATACGcaTACAAGTGGAGTATTCTACTGTTCTTTATGCAGTTATTACTACAAGAGTGAGTTCCTGTTGAAAACCCATGTGTCTGATAAACACATGTACAAATATGTTTGCAAAAAGTGCCCAGAAGTTTCATATGATAAGACCTCCGCAAAACAGCATTATATATGGACACATTTACAAAAAGGCAAGAAGAAGAATTCAAACTGGTATGATGCTAGCTCCAGACCTAGTTGGCTTAGCAACCGTGGCGGCAAGAGGCGTAAAGGTGTGCTCGCCTTACGCCCCGTGCGCAAACCCAGTAAGATCCCTAAAGACTTCCCCAAACAAACCTCTGTGCCTCAGGAGGAACAGTACCGACTGGTGTTAGATAGGAAACACTCGAAGAACTACCTGGAGTCAAGTTTCAAGTGCCAGCTGTGCTATAGAGGGTTTAGAGAGCTGTCGACGTATAGCAAGCATATGAAGAAACATGATCCtAGTCAGTCAGGACAGCTTCAATGTGACATGTGTAAGATGTACTTCCACAACACAAGGAAGATGTACCGACACATGCGAATCTGCCACATTTTTAAGTATGCATGTCGGATTTGCAACTTTGAAACATACAATAGGAGCTCGGCCCATATGCACTACAAATATCACAAGAATATAACATTCAGCTGTCCTCATTGTGACATGGTGTTCAATAAGATGTCAACGCGTCTCACCCACATCAGGGTGAAGCATCCGTCGACGTGCATCTGCGAGCTGTGCGGACACAGCTTCGTGAGTGACACCGGGCTGTACTACCACAAGCAGATCTCACATACTAAAGCGGAGGTGGAGGAGAGCGCGCGCGCGGGCACGGACGCGGCCGACGCGCTGTACTGCCGCGAGTGCCGGCTGCAGTTCCGCTCGGCGGCCGCCTTCGCCACGCACTTCGGCAGCTCCGCCAACCACGCCGAGGTCAACGTTTCATCGAAGCCGGTGCGCACGCCGAAGTCGatgcggcggcgcgggcgcggggagGCCGCCACGGACATCGTCAACAACGGCATGCCCACCTCCAACACCTGCGAGGTTtgtGGCGAGTCGCTGCGCAACGACGTGGCGGCGCGCAAGCACTACGAGGCGGTGCACCCCGGCGCTGACTACCTCAAGCGATACATGTGCGACATCTGTGGACATGTCACTAAGCAATACGCGAATCTGATGGTGCACATGCGAACGCATACGCAGGAGAAGCCGTATTCGTGCCCGCACTGCGACCGCAAGTTCAGCATGGTCAGCAACCGGGACCGACATCTCGTGGTGCACACTGGTGAAAAACGCTACCAATGTCAACACTGCAACCGTCGGTTCACCCAGAGCAGTGCGGTCAAACTGCACATCCAGACGGTGCATCTCAAGATCCCGTACGCACCCTGGGACAAGAAGAACAGAAAACGACGTAAGGAACTGGAGAACGCTGGGGCAGCTTGCCTACCCCCACCACCTCCCCTGAAATATGTGGGGGAGGTGCAGGGAGATTATCTCAACGCGTATATTAATTATAACGATGAATGA
- Protein Sequence
- MRDLQACAICLRTRVKLHSMSIGTLRNDYNSISGLKTAKGNGLPEYLCMECLTYIKKIKKFKQKCHEAHFAMLELLSKNKEIDVSILEAFDWKQIGIGSNLSFLKLENVHYETVKFKWVHHNRSLLERGEKINIHHCSTIDTDVIFEVPIEPAVKSVVENELVAKKEIVEENILDESSHIDDNDDYDTTEPCKTLPNTVDAEKDDNIEMLFDSIFGTNSEKEQQSEDEDDNLSNGVSKSDDPQVQANDDVDGSQMHEEYATMIALSTQEVKAVVEVYKMFGQGKHECNVCQKKYHNENRLKVHMRMHDTHTSGVFYCSLCSYYYKSEFLLKTHVSDKHMYKYVCKKCPEVSYDKTSAKQHYIWTHLQKGKKKNSNWYDASSRPSWLSNRGGKRRKGVLALRPVRKPSKIPKDFPKQTSVPQEEQYRLVLDRKHSKNYLESSFKCQLCYRGFRELSTYSKHMKKHDPSQSGQLQCDMCKMYFHNTRKMYRHMRICHIFKYACRICNFETYNRSSAHMHYKYHKNITFSCPHCDMVFNKMSTRLTHIRVKHPSTCICELCGHSFVSDTGLYYHKQISHTKAEVEESARAGTDAADALYCRECRLQFRSAAAFATHFGSSANHAEVNVSSKPVRTPKSMRRRGRGEAATDIVNNGMPTSNTCEVCGESLRNDVAARKHYEAVHPGADYLKRYMCDICGHVTKQYANLMVHMRTHTQEKPYSCPHCDRKFSMVSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELENAGAACLPPPPPLKYVGEVQGDYLNAYINYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00887683; iTF_01082799; iTF_01438355; iTF_00796087; iTF_00971675; iTF_00970727;
- 90% Identity
- iTF_01438355;
- 80% Identity
- -