Basic Information

Insect: Thymelicus lineola
Gene Symbol: -
Assembly: GCA_963932265.1
Location: OZ010695.1:9917083-9923037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.094 14.1 0.9 1 23 299 322 299 322 0.94

2 12 0.092 8.7 8.0 1.7 1 19 338 356 338 360 0.92

3 12 3.6e-05 0.0034 18.7 3.8 2 23 366 387 365 387 0.97

4 12 7.3e-05 0.0069 17.7 1.9 1 23 391 414 391 414 0.93

5 12 8.5 8e+02 1.8 0.7 1 23 417 439 417 439 0.92

6 12 0.00014 0.013 16.8 0.4 2 23 518 539 518 539 0.96

7 12 0.13 12 7.5 0.1 2 23 559 581 558 581 0.95

8 12 1.1e-06 0.0001 23.5 4.1 1 23 587 609 587 609 0.98

9 12 0.00058 0.054 14.9 2.5 1 23 614 636 614 636 0.98

10 12 0.025 2.3 9.8 5.3 2 21 643 662 642 665 0.93

11 12 8.9 8.4e+02 1.7 0.8 1 10 673 682 673 691 0.92

12 12 0.034 3.2 9.3 1.6 3 19 705 721 704 726 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.094	14.1	0.9	1	23	299	322	299	322	0.94
2	12	0.092	8.7	8.0	1.7	1	19	338	356	338	360	0.92
3	12	3.6e-05	0.0034	18.7	3.8	2	23	366	387	365	387	0.97
4	12	7.3e-05	0.0069	17.7	1.9	1	23	391	414	391	414	0.93
5	12	8.5	8e+02	1.8	0.7	1	23	417	439	417	439	0.92
6	12	0.00014	0.013	16.8	0.4	2	23	518	539	518	539	0.96
7	12	0.13	12	7.5	0.1	2	23	559	581	558	581	0.95
8	12	1.1e-06	0.0001	23.5	4.1	1	23	587	609	587	609	0.98
9	12	0.00058	0.054	14.9	2.5	1	23	614	636	614	636	0.98
10	12	0.025	2.3	9.8	5.3	2	21	643	662	642	665	0.93
11	12	8.9	8.4e+02	1.7	0.8	1	10	673	682	673	691	0.92
12	12	0.034	3.2	9.3	1.6	3	19	705	721	704	726	0.90

Sequence Information

Coding Sequence: atggaGAGTGAAGCCCTTACGCCGAGTACCGATGTCTACCCAGTGCTTCTCATACCTAAAGCGTGCACCTCCTTGGAAACAAACTGTGACGCTTCTGATAACGTTTTTATTGATTTGACCATAACATCCCCAGACACCGAAGGAAATGAAGTTAGTATTTATTCTGGATTTTGCAACATCAAGCTAATAGACAGCTATGATACATCAGATCAAGGGTTGCATGCTACCTCTACTGCTAGCAGAGACCAGGTTTCAGTATTGGATACTGGGACAACATATCTTCCATACAGCCAGTCCCAAGTGTGGATAGACCCGGCAAGAAGTCCATATGTCTATAACAACTGTGACGCAGGTGGGTCACAGGAACGGTACTCAGTCTACCACCAATCTCACCCCAATCATATAACAGTTCAACATCACAACACATATATCACACAAAATGTTTACAACTGTAAGGACCCCATTCGTTATTCACCGGTCGATGAGTTTGAACATAAAAAGTTCAGGAAGATTCAAAATGAATCAAGCAATCACAACAGTTTGGCAGATCAAATTTTGTATGAAGATGATGAGTTTGAGTGCGGTGTCTTTCTTTCCAAGTTACCTGAGGAGATATGGAATGAGAATGAGACTCGGGCACGAGAAGAGATGAAGTATGTGGGAATGCAGAGTGAGAATGATGCATTGAAACAGCTTATGTCATCGGATATACAGTCTTTGTCCAAGCAACAGAAGACTATTCTCTTTCTGGGTCATGATTCACATTTTGGTCAAACTATTCAGAAAATTGCCATAAATGATCCTTATTTGGAATGTGCTCCCCTTGTTCAAGATGATGTAGATCATGAAGTTGTTAtcggTCAAACCAAGGCAACAAGGCCCAACCAAAAGAAATACCAGTGCGACAAATGCAAGCAGATATTCGAACAAATAGCAGAGTTCAAGCAACACATGATCTTCAACCACAAGAGTCCGAAAATCCCCGTGATAGCCGGCCACAGCGAAGTCAAATTCATGTGTCTCGAATGCGGGAAGAACCTTAAAAACCAAGAGAAGTTTGAGATGCACTGCCTCGGACACGGCGACCCAGACTTAGAATGTAACAAGTGCCATAAAGTCTTCGCGTCGAAATTCACGCTTCGCACCCACAGAAAGATTCATCTGAGAAAGCACCCTTGTAAGTACTGTTCGAAAACATTCTCCAACTTCGAGGATTTGAAGAGTCATGCTGCAAAAATTCACTTCGTCTTCATGTGTCGTCTGTGTGCCTTTACAGCGGATACCTTCAACGTGTTAAGGGAGCATAGGAACACCCATACTGAAGTAGTTCGAGGATCGAGTGACACGGACTTCGGAGATGATTTCATCACTGAAAGTGGCACCGTATCGCCTGTCCCTGGACACTCCGAGCAAATCATTAAACACGATGACATTGCCTTGGACAAACAGGATGAAATCGCGAGAGCAGACTCCATTATCGCTAAAGTCATGTCCAACAAGATGTTTCTTCTGCACTCTAAAAAGTCGAAACGTGGCAAGAAGTTTAGAAACACCTGTGACGTTTGCTTGAAGACTTTCGATCGGGTGTCGGATCTTAAACGTCATCTCATAGAGCACGTCATTCGTAGCACCCTTGCCAAGAACCCGGTCGACAATCATGGGGCTCTGAACATAGTCTGCGAGGTATGTCAAGTAGAAACCTTCACTAAGGTAGATAAATATAAGGCTCACTTACGCGAACACGCTAAACTGACCCTATACAAATGCACCTTCTGTGATAAATCCTTCAGCGATTCAAGCAATTTCtccaaacacaaaaaaatacatggCTCAACGTACTTCCAGTGCGACCTTTGTCAACGGAAATTCAACTCTAAGAAGATGATAACACAGCACATGGAGTATCACAATAATAATGCGCCCATACAGTGCTACTATTGCCATAAAGTTTTCCATTTTGAATCGATGCTCAATAAACATGTTAAATGCGCACACACACGAGAGATCTTTTCTAGATTTCGTTGCAGATTTTGTCATAAATACTTCCTGAGTCTCAGGGAGAAATGGGACCATGAGTGGACTGTGCATAATGTTAGAAAAATGGTTGTTGACTGCATGATTTGTGGCGCTAAATACAGAAAGTATTCAGAATTGAAACGTCATTGCAGTAGCGTCCATGAAATGGACATACCTCCCGCGaagaattttttcaaaaaacgaAAATCTTGGTAA
Protein Sequence: MESEALTPSTDVYPVLLIPKACTSLETNCDASDNVFIDLTITSPDTEGNEVSIYSGFCNIKLIDSYDTSDQGLHATSTASRDQVSVLDTGTTYLPYSQSQVWIDPARSPYVYNNCDAGGSQERYSVYHQSHPNHITVQHHNTYITQNVYNCKDPIRYSPVDEFEHKKFRKIQNESSNHNSLADQILYEDDEFECGVFLSKLPEEIWNENETRAREEMKYVGMQSENDALKQLMSSDIQSLSKQQKTILFLGHDSHFGQTIQKIAINDPYLECAPLVQDDVDHEVVIGQTKATRPNQKKYQCDKCKQIFEQIAEFKQHMIFNHKSPKIPVIAGHSEVKFMCLECGKNLKNQEKFEMHCLGHGDPDLECNKCHKVFASKFTLRTHRKIHLRKHPCKYCSKTFSNFEDLKSHAAKIHFVFMCRLCAFTADTFNVLREHRNTHTEVVRGSSDTDFGDDFITESGTVSPVPGHSEQIIKHDDIALDKQDEIARADSIIAKVMSNKMFLLHSKKSKRGKKFRNTCDVCLKTFDRVSDLKRHLIEHVIRSTLAKNPVDNHGALNIVCEVCQVETFTKVDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGSTYFQCDLCQRKFNSKKMITQHMEYHNNNAPIQCYYCHKVFHFESMLNKHVKCAHTREIFSRFRCRFCHKYFLSLREKWDHEWTVHNVRKMVVDCMICGAKYRKYSELKRHCSSVHEMDIPPAKNFFKKRKSW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01082774;
90% Identity: iTF_01438320;
80% Identity: -