Tlin022391.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010698.1:7127208-7148360[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00083 0.079 14.4 0.1 1 23 538 561 538 561 0.97 2 11 5.2e-05 0.0049 18.2 3.2 1 23 576 598 576 598 0.97 3 11 0.0005 0.047 15.1 2.0 1 23 604 626 604 628 0.97 4 11 2e-05 0.0019 19.5 4.6 1 23 633 655 633 655 0.99 5 11 1.5e-05 0.0014 19.9 0.2 1 23 661 683 661 683 0.93 6 11 1.2e-07 1.1e-05 26.5 0.1 1 23 689 711 689 711 0.98 7 11 4.3e-06 0.0004 21.6 1.6 1 23 717 740 717 740 0.96 8 11 0.00085 0.08 14.4 3.6 1 23 746 769 746 769 0.95 9 11 0.00045 0.042 15.2 2.6 2 23 776 797 775 797 0.97 10 11 2.3e-05 0.0022 19.3 1.0 1 23 803 825 803 825 0.97 11 11 0.0034 0.32 12.5 0.1 1 23 831 855 831 855 0.94
Sequence Information
- Coding Sequence
- ATGTACCAGACCTGCTTTGTTTGCGATGTTAACAATATTGGTGTTCGAAAtggatttaatttattttcggaAGAAACCACCCTTCAGTCGAGAAAAAAGATGATAGAAGTGTTAAGTGAGATATTGGACAAACCAATTGATGAAGATAATGTTCATTCAAAAAGCATATGTAAAAAATGCCACAAATTGGTGTCTGAGTATGATTTAATACAAATCAGAATGCAAGTGATAAAACTGGATCTTCAATCTGCCTTCAAAACTACCCTCCCCCGCCACAAACTGAACTACGACACATATAATAATGAGCAAGTGATAATTCATGTACCTGCATTGAATACTGTGGAAGCTAAGGAACCCAAAAAGACCCTGGTGTTGCCCGCGTCTAAACTTCAACCGGTGCCTGCAGATTTTGTTTTGAGATCTGGGAAATGGTtgaataccaaaaatattgctAGTAAGccCATCGTAACTTTACCATCATCAACGGCGACGCTAAACTTGAAAGTGACCGTTGGTTCCTCGGTTCTTACACAGAGCATCAAAACAACTAATGctattggaaataaaataatatccttATCAAACAGTTCTAATAATACAGAAAACTACATTTTAGCTCAAAAAGAAGATAATTCCACAAATGCAGAAATAAATATTGACGCGAATACGTTATTGCAAACCATAGAACCTCCAATAAGCTTATCATCCCTAACTTATTCAACTCCTAATATATCATCAGCTAAAATGAATAGTTCAATATTAAGTTTTAATGTGAAATCATTGCCAAAGGATTTTCTGTCTTCCGGTGTATTTAATAAGGTTGATGTTAATGAGCTAGTCGATCTTGAGACGAATTTGAAGAAGGAAATTCATGAGCACAGTGATACGGAGAATAATGATGAACAGCCTATGGAAATAGATGAagATTGCTCCTTGGCTGTGGCAGTTAGTAGTAATAAAGATAAATCCTTAACCAAAGATTCCGACCAGAACGAATCGGATAAGTCCAAAGATTTCCTTGAAAATCTCTTACCCGGTCTAACATCTAATGAAGACACGAATGACGGCGATATGGAAAACAGATACATAGTCGGCAAACTGGAGATACTCAACGACAGAGACGATGACGAGGATGGCCCAACAATTGTGATGGACGGTGAGAGTGGTTCCATCATACGGCTGGTGTCGGGACAGAAGTTTTTATACGGTGACAGTGAGATATCATTAGTGGTGCCGGAAGAGTCGCAGGAGTGTGATAACGATAATGCTGATAGTCAagATTCGAATGATGAATCGCAAATAGAACTGCAAGTTTCTGGCGACGAAGAAACGGCCAATGCTATTATTGCAGCGGCTCAAGAGCAAGgtgGTGCTTTCATAAAAGTGGAGTCTGGTAAGATGTACAGAGTGAAATCAGTTCAGAGTACGAAGACTGATGATACAGTGACCAGTATTGATCTACAGCCGGCCTTGAACTCGATGGTTAGGCAAGAGGAAAATGGTCAGTTCAAATGTTTACTCTGTGAGAATAATGAAAAGAAAGAAGTAACGTTCGTCGGCGACGCGGACTCCACGATGCAGCATCTGAAGGGCGAGCACGCAGCAAGGGTGTATATATGCGGGCAATGCGGACAGGTCGTGAGGAAACGGAGCGAATACGTCGCACATATGGaaatgcAACATCCGAAGGGGGACAATATTTTACACATAGACAAGAATAAAACCCATCAGTGTAATATATGCAATCAAACTTACAGGTCCCAAACTCTCTTGTCGAAGCACATGAGCCTCCATAATGGGGCGAAGCCCTATATTTGTAGCATATGCAATAAGTCTTTCGCGTCCAAGTATACACATCAGTCGCATCTTAAAATACATATGGAGCGGACTCGGCTGTTCAAATGCAAGCAATGCAGCAAGTCGTTCTTCACGCAGCAGAACCTCAACCAGCACGAGAAGACACATTCGGGCGTCAAGGACTTCATCTGTAATACTTGTGGCAAGGCGTTCGCGTCGCAACACAACCTGGAAGTGCACGGTGTAGTACACTCGGGCAACAAGCCGTTCGTGTGCGCCGACTGCGGCAAGGCGTTCGCGCGCCGCGCAGAGCTCAGGGACCACATGCGGATACATACCGGCGAGCGGCCGTTCTCATGCGAGGTGTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCGCACCGGCGCGCCACGCACATGGACGACAAGCGATACCATTGCACGCAGTGCCCCAAGCGGTTCAAACGACGCAGGTTATTAGACTACCACATAAAGGCGTCGCACACCGGCGAGCGACCTTTGAAGTGCGACTTCTGCAAATCTACCTTCGTGTATCCAGAACACTACAAAAAACATATTCGGATACACAGCGGGGAGAAACCGTATGTTTGTGAGGTGTGCGGCAAATCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGCGTGGTGTGCGGCGCGGGGTACATGCGGAAACAGCTGCTGTACCAACATATGAATACCACGGGGCATTTAGCAGAGTCGATAGTTGTGAATCAACCGCGAGTAGTGAAGGGACTTAAGAATataTACGAGACCACAGATGAGTTACAACTGCACACTGAAGATGGAAAACTTGTTGCAACTGACCCAGACAATAcgccaaaattatttataactgAAGATAAGAAACTTATTATTCAAGACGGTAAATCTATAAACGTTGTACAAGACTCTGATGATTCTGCATTACTTAGTCTACAAAATGCGGACGCCAGTTTCAAAGCAGGTACTGCCGTCTTAGAAGGAATCACCGCTGAACAGTTGGAACAAGTACAGTTGATGGCATCAGACGGGTCGGGCACTTCGCTTCGTTTGGTGCAGATACAACTGGCGGATGGAAATAACGGATGGCTCGCGATCAACCAATGA
- Protein Sequence
- MYQTCFVCDVNNIGVRNGFNLFSEETTLQSRKKMIEVLSEILDKPIDEDNVHSKSICKKCHKLVSEYDLIQIRMQVIKLDLQSAFKTTLPRHKLNYDTYNNEQVIIHVPALNTVEAKEPKKTLVLPASKLQPVPADFVLRSGKWLNTKNIASKPIVTLPSSTATLNLKVTVGSSVLTQSIKTTNAIGNKIISLSNSSNNTENYILAQKEDNSTNAEINIDANTLLQTIEPPISLSSLTYSTPNISSAKMNSSILSFNVKSLPKDFLSSGVFNKVDVNELVDLETNLKKEIHEHSDTENNDEQPMEIDEDCSLAVAVSSNKDKSLTKDSDQNESDKSKDFLENLLPGLTSNEDTNDGDMENRYIVGKLEILNDRDDDEDGPTIVMDGESGSIIRLVSGQKFLYGDSEISLVVPEESQECDNDNADSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGKMYRVKSVQSTKTDDTVTSIDLQPALNSMVRQEENGQFKCLLCENNEKKEVTFVGDADSTMQHLKGEHAARVYICGQCGQVVRKRSEYVAHMEMQHPKGDNILHIDKNKTHQCNICNQTYRSQTLLSKHMSLHNGAKPYICSICNKSFASKYTHQSHLKIHMERTRLFKCKQCSKSFFTQQNLNQHEKTHSGVKDFICNTCGKAFASQHNLEVHGVVHSGNKPFVCADCGKAFARRAELRDHMRIHTGERPFSCEVCGASFTQRSNLHSHRRATHMDDKRYHCTQCPKRFKRRRLLDYHIKASHTGERPLKCDFCKSTFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYQHMNTTGHLAESIVVNQPRVVKGLKNIYETTDELQLHTEDGKLVATDPDNTPKLFITEDKKLIIQDGKSINVVQDSDDSALLSLQNADASFKAGTAVLEGITAEQLEQVQLMASDGSGTSLRLVQIQLADGNNGWLAINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00887606;
- 90% Identity
- iTF_01438232;
- 80% Identity
- -