Tlin010797.2
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010686.1:13690060-13699810[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0082 0.78 11.3 1.5 3 23 697 718 696 718 0.96 2 23 0.032 3 9.4 0.6 1 22 1093 1114 1093 1114 0.95 3 23 4.3 4e+02 2.7 0.4 1 22 1156 1177 1156 1179 0.82 4 23 0.031 2.9 9.4 0.7 3 21 1190 1208 1188 1209 0.94 5 23 0.69 65 5.2 0.1 2 23 1217 1239 1216 1239 0.89 6 23 0.007 0.66 11.5 0.1 3 23 1260 1281 1258 1281 0.96 7 23 0.0036 0.34 12.4 3.2 1 23 1287 1310 1287 1310 0.95 8 23 0.15 14 7.3 0.0 1 23 1337 1360 1337 1360 0.90 9 23 0.022 2.1 9.9 3.4 1 23 1365 1387 1365 1387 0.97 10 23 0.0067 0.64 11.5 0.1 1 23 1393 1416 1393 1416 0.95 11 23 0.0027 0.26 12.8 1.3 1 23 1429 1451 1429 1451 0.97 12 23 0.00021 0.02 16.3 1.8 1 23 1503 1526 1503 1526 0.97 13 23 0.005 0.47 11.9 1.6 1 23 1592 1615 1592 1615 0.96 14 23 0.0011 0.1 14.0 2.0 2 23 1640 1662 1639 1662 0.95 15 23 0.0056 0.53 11.8 0.1 2 23 1668 1690 1667 1690 0.95 16 23 0.015 1.4 10.5 0.2 1 21 1733 1753 1733 1754 0.95 17 23 0.0014 0.14 13.6 0.6 1 23 1764 1786 1764 1786 0.93 18 23 0.00031 0.029 15.7 0.4 2 23 1877 1899 1877 1899 0.93 19 23 2.1e-07 2e-05 25.7 1.1 3 23 1906 1926 1905 1926 0.98 20 23 0.0026 0.25 12.8 0.2 1 23 1945 1968 1945 1968 0.95 21 23 0.072 6.8 8.3 0.0 1 23 1995 2017 1995 2017 0.98 22 23 0.032 3 9.4 0.6 1 23 2023 2046 2023 2046 0.95 23 23 7.5e-05 0.0071 17.7 0.3 1 23 2054 2077 2054 2077 0.96
Sequence Information
- Coding Sequence
- atgagtGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCATCAAAAATAAGGGACTGCGTTTCCGTACAGataacAGAGAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATATATTTAAGGAAGTTTGTGAAAGGACACAAAACAAGCTACAGTCTCTGATTAATAAAGATGGCAGCCTACTAGAAGAGattaaagtaaaaaatgagCCTTTATCTGATGAGGCCTATGATGATGGAGTGGTCATTGATGGCTCCTATCCTGATAGTGAGAATGGCGGTGTGGGAAATAAATTGCAACCAGAAGGACCACCAATCTTGGCATCATTGGGGCTCACACCGAGGAGTGATAAGACATATGTAGATCCCCGCATGGATTGGCATCGGGTCCATGCAATTATGCGCATGGTTCAAGATGATGAAGCCATAGACTCACTGCAGTCCATAGAAGAGTGTGATATTGTGCATCAATCAGACCATGATTCGGATTCAGATGCTGAATTAaatgatgatgttgatgatgattTCATTAATTGTAAAAATGGATTTTTGCTTCGGAATAGGCAATACTTATCGAAATACCCGAAGTTATCGTCATCTGCAAATTATGCGAAAGCAAAGGAAGTTGTAAAATTAAGAAAACGTAATGctaataattttaaacactaTCCCCATCCAAAAAATGCTTGGCAGTTGTTTTTCACAGATGATTTGCTAGAACTGATTGTGGGCTCTACCAATGAGAAAATTTGTATGGCCCAGAAGGGCCAGAAGGAATCACTTCATTCTACTGATgtaactgaaattaaaacatttattggTATACTATATTTACATGGAATTATGAGGCCAACCCACCCAAAGTTCAGTGACATATGGCACAGCAAATTGGGGTTTTTGTCTGTTCAGAGAGCCATGAAACTTGAACGATTTAGATTCCTGCTTCAGAACTTGAGTTTTGATTACAAAAATTGCAACAGTATCATACAGTTAGATGTAATGAAGCGATTTCGTCAAGTGTTTGAAATATTTGCTTTGAATTGTAGAACAGCATTTGAAGTTCGGAACATTATTGTTATTGATGAAATAATTGTACCAGTGAATGGACCTTGTCCTTTTCGATGCAAGATTGAAAAAAAACCATTTGAGTCCGGAATTAAAATAGTTTTGGCAGTCGATTCATCAAACTTCTATGTTACAAACCTGGATGTTATTACAACAAGATATTTTGCAGCAGATGACATTGTCAAAAAGTTAGTTCAGCACTTGGCAGGAACGGGGCGATGCATTCTTGTAGATAGTTGGTACACTTCCCTGAAACTAATTGAAATGTTGAAAAATGAGTATCAACTGTACTGCATAGCGGCTGTTAACCCAAATGATAACATAATTCCACCACTGTTCCTGTCCAAAGTCAGAATAAATCAACCATTCATGAGTGGATTTCTGAACAATGATGTGTCATTGTCTTCCTATGTTAATTCAAAACTAGAGTGTGCAAATGTTTTGACAAGTGAACCCAGGTTTTACAAAAGAGGTCATGCAAACCATACTACAGTGGTTTCAGTCTATAAAAAGAACAAGTCTGCTGTGGAAGTTTTGGACGTTCTAATGCATTATTATACAACAGCACAAAATACAAACGATTGGACCATGTCATTGTTCTTCACTCTCTTAAACATTGCTGTTGTGAATGCCCAAGTTGTATGGAGTTCTTTTAACTCGGAGAAAATTGTTCAGCGAAGAGTTTTTATCAAGGAATTGGCACTAAGTCTTTTGGACAGAGACGGTTTACTTTTACCGAAATGTAAGGGCGCAGATAGCGACAAGGACGAGGAAGACGAAGAAGAAGATGAAGAGATGAATGAATCCCAAACTTATCCACCAATTGTGAACGTTCCGAACATGCCAGAAGTTTCCATAACGGTCATGCGGCCCACAGGAGAGACGTTACATGCACGACAAGGTATCCAACAACTCGCATCTAAAGACTGCCTCGTCTGCGGTCGATCTTACCGATACTCCCATAATGCTAGACGTCACGAACTCACTTCCCACGGATTCGATAGATACACAAACAAAACAACCCACAAGAAAACCTCATCGCACCTACAACCAAAACTTAGGCCTAATCCTTTTAATCCCAAAGCGCGGCTGATGCCTAACCCTATTAGTCATAAAATGCAACTTCTCCCGAAGAACATTCCGACCAAAGCTATTTCACAAAAAACTGTCACTCCAGCAAAACCAATACCCATCAAAACTATAAAACCACCGCAGCAAAATCAAAATCTGCCATATCCGTTACGTATTAAAGCATTAAAGgatttacaaattaaaaagaagGAACCTCAAATATTAAAGACGCTTCTGACAACTAAACCTGAAGTACTGATCTCAGAACCAGAAATAATTAATTCTGGCCCAGAAAGCCCTGAAACTTTAATATCGGAACCAGAAATAGCATCTTTCCAGGTAGAGGCTATCCTGTCTGAGCCGGATGGTTTTGTGAACCAACACGACGAGGATATCGATCCACGtcaatttaaatcaaaaaacCATGGTCAGAACTACGACACAGTCGATATGGATACTGACAATGAAATTGAAATCGCCCGCCATCAAGAGAATGAGTGTGAAGATGAACCAGAAAATAATGCAGATAATGATCAAGAAAACACAGCAGCAGCTCATAGCGATACTGAAAAACAGAAGGAAGAAGAAAGCGAAATTAAAACTGAGGATGATACGGAAAATAACGACGTAAACAAAGATGACGAACAACCAAAAGAAGACGAGGAGAGAGAAAATGAAGACCAAAATCATCAAGATGAAAATTTTGAAGACGATGATGATGAACTTCCACCTGTGAGTTTAGCGCCTGTTGTGGAAATTAATGAAGATATGCAAAATAACTCTTACAACAGTGAATTAAATGAAGAGGAGGATGAAGATTTTGAATCAGCAGATGCTAACGACACAATTGATGGGGATGATAATATGAAAGAGCTGGATCCAAATAAGGTTTATGTCACGAAATTGCAACGAGATTTCATCGTCAAGTATCGTGACATCATTGAACAAATTAATACCAAAAAATGCCTTTGCTGCAACAGGGAACATCCCCGCAGAAAAGCAGTTATCCAACATTTACAAAAGAATGGCCACAAAGTACCTAAACATACTTGTTATAATTGCGTAATAACTTTCAGTCATATTGGAGCATTACTCAGTCACATGCGGTCTAATACATGCACCGATTTATGGAAGATAATATATAATGAGAATGGAATTACTGATGACCTTGTTTTGGAAGATGAACCGAAAGATCCTAAGGTTCAATACAAGGACATATTAAACGCTAGGTCATACTCTTGTAAGTTGTGTCCAGCCAAATTTCAATTGAAACAATTTATAATGAAACACGTCTTGGATGTTCACGAAGATAATCAATCCAAAGTGCATTTGGCTTGTGTCCATTGTGGTTCGAGATTCAAAGATACAAAGTTGTGGAAAAAGCACATCCGGAATGGCGAATGCACTGTGTATATTTCGTGTGACTTATGCTCAGAAAAGTTTATCAATATGCAAGACTTTAACGATCATGCCTTAGCGGTACACGCTGGCAACTTTGATATGTCTGACAGCCACACCAAATGTGTCGACGGTCGTCCAACAGATTGTCCTATATGCGGCAAAAAGAACAGCAGCTATCCTAATTTGGTCAAACACTTAAAGATAATTCATAACGAGGAAACTCCTCATTACTGCCAGCATTGCGATGCCAAATTCGAACAAACTGCCGATCTTAACAAGCACATATACATGCAACACTCCGATAGGTCTCTAGGTGTACAGATTTCAACAGAACCAGACATGTCCCTCGTCAAAGAAGAAGCTGAAGAATATCATTATTCTTGTACAGAATGCAATGCCATTTTCGAGACAGTAGACGCTTGGACTGATCATCAAGTGGCAGAACACAATCAAGTTGCTCATCATTGTGATCAATGCGAAAAGAAATTTTTGCGACCCTCTGAGCTGgctgaacataaaaatacacattTGCGAGTGAAATTTTATCCTTGTAACATTTGTTCGAATTCGTACAGTACTCCTCAAAAGCTCGCCGAACATGTCCAACAGGTTCACCCCGGTTCAGGGGGATATAATTCTGTGGATGCTGAATTCTTCTGTGACATTTGTATCAGATCATTCAAGAGCCGCCAGGCATATTCTAATCATATGCGTATTCATTCTAAAGTACCGACTACTAACAGGAAGCCTGGAGATAGTGGAAATATGAAAGGGTTCCCTCCTCAAATTATTGGAAAACCAATACGACACTTCTCTATGGTCCAGCCAAGCTTCCTATCATTCAAGCCAAATTGTAATGTTCCTAACGCACCTTATTCTTGTGATATTTGTGGCAAAGGTTTTATGCATAAGAAAAATATATGGAAACATAAGAAGGTTCTACATGCTGATTTAATAAACGATAGAAACGACAGCGAAGAGAATACTATGGCGGCATCGACAGAAGAGGACGACTACAACATGGATGAGAATGGCGCCATCTTGTCGACTCCGCAGTTCAACAGTTTCAATTTTACAAATATGACAAACAATGTACCGCAacagccgcagccgcagccgccGGCACAAGACCCTATGCCATATTCCTGTGAACTGTGCTACAAGCGATTCCCTCTTAGAACAAGTCTGTGGAAGCACAAACGCGCCAAGCATGGAATTATTAACGCCAGTGCTATCGGACCTTCAGATTCTCAGGGAACACCGAACGAAGCGTCGGGGCGGTCGAGTTGTACTATATGCAAAATAAGTTTCTCTGACAAGAAGTCCTATTATCGACACAGGAAAAATGTCCATAAATCTACTGTGCAAATGTGCAAGATCTGTGGTAAACCGCTTAGTTCCACGGTCGAGCTTTATGAGCATCTGAGGGCTGCTCATGCACAGGAATTGCTGGGCTACAACGCTAGCCAGGGCCCGAGCAAACAAGAAATAGGACAAGAAATGGAAGCTGATTATGAACAAGATCAGGATTCCATGGATCCTAGTGCGGAGTATCAGGCACGTTACCCGTGTGACACGTGCGGAAAACAGTTCGTAGGGCTTCTCGCATTGCAAAATCACCAATGTCTCAATCAAATGCAATCTCAACCGCAAACGTTTGACTGCGAGATTTGTCACAAGAGCTATACATCAATCGCTGCGCTCAAGAGCCACCGAGGCTGGCACTTACGTTCCCCCGATGGTAAAGCCGCCGCCAACAACTCCGGTCTTTGGATGCCGCAACACAAAGTTACAAGCAAAGTGAGTAAACATGAAGTAGTCGATGCTTCTCAACTGGCCAAAGTTCAACATACAACTCCGGTGAGCATGGTTGCGAAACGAAGGTTACCACCCGAAGTGGAAGTAACCGTGGTTAATCCGAACAAAAAATTACGATCGGATGACTCCGTAGAAATGGACCAACAAAACAATTCATCCTCAGGAGTGGACGATAGGTACTGTAACTTATGTGACAAGGAGTTTACGAAGCGGGCGGCGTACCAACGCCACATGGACGAGGTTCATCAACCGAACTCGGTCTTCTGTCCGGTTTGCGACAAAAGTTTCACGCGGAAGTCGACGTTGATAGTTCACATGAAGAAGCATTACGATGGAGGTGAGGGTAGTTCTACGGGAACGTGTCAAATGGATGACGATGGtcacgtgtgcgatgtttgtgAGATGTCGTTCGAGACTGCGAATGAGTTGAGTGCCCATCGTTCGGTACAACACGGTGACGGGGACGGAGAAGGTGAGGAAACTGGCGAATCTGAAGATGAGGGAGTGGGTAATGTGCAACAGCCTGGGGAGTTCACCTGCAGCCAGTGCGGCGACGGTGTAGCCACGCCTCGTGATTTAATCGCTCATCGCGCAATGCACGCCACACCGACCAAGTTCTTTTGCAACATTTGCAAGGTATACTTTGCCCGAGCTCTCGATCTATCCTCACACACCAGAGCGAGACATTCGGACAACGATAAAGTTTGCTTCCCTTGTGCCATGTGCGACCGTTCTTATATGAATAAGAAGAGTTTGCAGCGTCATATTGAAATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVQITENDDLPTNVCRKCMDNVNNWHIFKEVCERTQNKLQSLINKDGSLLEEIKVKNEPLSDEAYDDGVVIDGSYPDSENGGVGNKLQPEGPPILASLGLTPRSDKTYVDPRMDWHRVHAIMRMVQDDEAIDSLQSIEECDIVHQSDHDSDSDAELNDDVDDDFINCKNGFLLRNRQYLSKYPKLSSSANYAKAKEVVKLRKRNANNFKHYPHPKNAWQLFFTDDLLELIVGSTNEKICMAQKGQKESLHSTDVTEIKTFIGILYLHGIMRPTHPKFSDIWHSKLGFLSVQRAMKLERFRFLLQNLSFDYKNCNSIIQLDVMKRFRQVFEIFALNCRTAFEVRNIIVIDEIIVPVNGPCPFRCKIEKKPFESGIKIVLAVDSSNFYVTNLDVITTRYFAADDIVKKLVQHLAGTGRCILVDSWYTSLKLIEMLKNEYQLYCIAAVNPNDNIIPPLFLSKVRINQPFMSGFLNNDVSLSSYVNSKLECANVLTSEPRFYKRGHANHTTVVSVYKKNKSAVEVLDVLMHYYTTAQNTNDWTMSLFFTLLNIAVVNAQVVWSSFNSEKIVQRRVFIKELALSLLDRDGLLLPKCKGADSDKDEEDEEEDEEMNESQTYPPIVNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHGFDRYTNKTTHKKTSSHLQPKLRPNPFNPKARLMPNPISHKMQLLPKNIPTKAISQKTVTPAKPIPIKTIKPPQQNQNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLISEPEIINSGPESPETLISEPEIASFQVEAILSEPDGFVNQHDEDIDPRQFKSKNHGQNYDTVDMDTDNEIEIARHQENECEDEPENNADNDQENTAAAHSDTEKQKEEESEIKTEDDTENNDVNKDDEQPKEDEERENEDQNHQDENFEDDDDELPPVSLAPVVEINEDMQNNSYNSELNEEEDEDFESADANDTIDGDDNMKELDPNKVYVTKLQRDFIVKYRDIIEQINTKKCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFSHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDPKVQYKDILNARSYSCKLCPAKFQLKQFIMKHVLDVHEDNQSKVHLACVHCGSRFKDTKLWKKHIRNGECTVYISCDLCSEKFINMQDFNDHALAVHAGNFDMSDSHTKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEETPHYCQHCDAKFEQTADLNKHIYMQHSDRSLGVQISTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLAEHVQQVHPGSGGYNSVDAEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGDSGNMKGFPPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMAASTEEDDYNMDENGAILSTPQFNSFNFTNMTNNVPQQPQPQPPAQDPMPYSCELCYKRFPLRTSLWKHKRAKHGIINASAIGPSDSQGTPNEASGRSSCTICKISFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQGPSKQEIGQEMEADYEQDQDSMDPSAEYQARYPCDTCGKQFVGLLALQNHQCLNQMQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLAKVQHTTPVSMVAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNNSSSGVDDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDGGEGSSTGTCQMDDDGHVCDVCEMSFETANELSAHRSVQHGDGDGEGEETGESEDEGVGNVQQPGEFTCSQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFARALDLSSHTRARHSDNDKVCFPCAMCDRSYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438228;
- 90% Identity
- -
- 80% Identity
- -