Tlin017731.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010693.1:6259118-6259468[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-12 1.7e-09 38.2 0.0 1 38 8 46 8 51 0.91 2 2 1.1 5.5e+02 1.3 0.0 9 18 51 60 48 61 0.91
Sequence Information
- Coding Sequence
- atGCCGAAGAGAAAGCTATGGGATCCTGAAGCAATGAAAAAAGCCGTTGAAGCTGTCCGAACTAAAGAAATGGGGTATAAAAAGGCAGTTAAGTTATTTAATGTGCCAAGAGCTACTTTAAAAGATTATGTCAAAAAGTCTGATACATCTATAGAAGATATAGTTTCTGGAAAAATGGGAAGAAAACCGATTTTACCAAATAAATCAGAAGAGCAGTTGGTAAACTATTGTATACAAATGGAAAAGAATTACTATGGTGTCACCGCTTCGGACTTAAAACATATGGCTTTTCAATTCCTATGGAACCCACAACGTCCAGACCAAGAACACGAACGTCATCATCTAGTTTAA
- Protein Sequence
- MPKRKLWDPEAMKKAVEAVRTKEMGYKKAVKLFNVPRATLKDYVKKSDTSIEDIVSGKMGRKPILPNKSEEQLVNYCIQMEKNYYGVTASDLKHMAFQFLWNPQRPDQEHERHHLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00455859;
- 90% Identity
- iTF_01438827;
- 80% Identity
- -