Tact010820.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- Rfx2
- Assembly
- GCA_951805285.1
- Location
- OX638218.1:2590879-2608517[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 1.9e+04 -2.8 0.0 18 49 370 401 365 404 0.82 2 3 9.3e-38 1.6e-33 116.0 0.0 3 78 565 640 563 641 0.97 3 3 2 3.5e+04 -4.0 0.0 25 35 977 987 975 992 0.76
Sequence Information
- Coding Sequence
- ATGGCGGCGCAGCTCGCGGCGCCCGCGCAGGGCGATGGCGCGGGGGgtgcgggcggcgcggggggcgcgggcgggGCTTCGCCGAGCGCCGTGCGGGAGTTGATCGTCATTCCCGAGCTGCCCAGCTCGCTGCATCTACAGCACGCCATACAACAGGTGTCCACTGTGGAGGTGAACGGGGACAGCTCTGGACACTCGAGCCCCAACTCCGAGGCTCAGCACGCCTACATCACCGTGTCGAgaggactggacctgtcggttctgctgggggctatccagtcactgagggaggagcagcgggcagcctgggaggagcagcgggcagcctgggaggagcagcgggcagccagggaggagtggcGTGCAGCCGTCCAGTCCCTGGAGAACAACCTGCGCCGGTCCCTGAAGGACGACATATTGGGGGCCTTGGACGTCGGAGTGGCGAAGATCACAGGCGTGTCGCAGGCGTCGCGGCGCGTGAGCGAGGAAGGAAGCGATGGTGGCGCGGCCGGGGGGATGCCACCGCGGTCAGCGGCCGACCGCGCGGCTATGTCGGCGGTTGAGGAGAGTAAGGAGGAGAGGCCTGAGAGTGAAGAGGACGGTCTCGGAAGTAAGGAGGACATTCAGTGTACTAGGGAAGATGTCGATGACAGGAAGATGGGCGTGGCCGAGACATGTTCGGATTGCGTACCGACGGAGCTGGGACTGGGCCACGGGCACTCGGATCCGGTCGTGGTAGCAGCGTCGCTACCATTGGTGGAGCCGGCCGAGCTGAGCCTGCCCGACGACACCATCCGCGCCGGGCTGCCGTCCGCGCTGCAGCTGAAGGCCGTGGTGTGCGCGTCGCAGATGCACGAACACCTGCTATCTGATGGGTCAAGGCCTGGGTTTCTCATCAGCGACGGTGCCGACGTGGGCAAGGGCCGCGCGACAGCGGGCATCATCCTCGAGAACTACCTGAAGGGTCGCAGGCGCGCCATCTGGGCGTCTGGTTTCAACGATCTCAAGTACGACGCCGAGCGGGACCTGCGCGATACCGGCGCCGGGAAGGTTGAGGACCATCCCTCGAATAAGTTTGAGTACGTGAAGAACTTGTCGGCGGTGAACGGCATCGTGAAGAGGGGCATGGTGTGTAGCGCATACTCGGCGCTGATCGGGAAGATGCAGGCCGACATCAGGTACCGCACGCGCTTCAAGCAGCTGTTGCAGTGGTGCGGGGAGGGCATGCCCTTCCCcacgtttatggattttaataAGACGTCAGGAGTGTCGGGAGTGTATTGTCCGCCCCGTCGCGACGCCCCAGTCCTAGCCCGCTGGTGCGTGTGTGTCGGAGGGCCGCTCCCAGTTGCCTGGGAGATCTCCATCGAGATGGAGGTGCCTCGATACCGCGCGTTTTTCCCCTGCGAGGGCACCAACGGAGTCAACTACCACGTGCAGTATGTGGAGCCTCAAGATATATACGCTCAGGGCCACCAGCCACACATGGAAACTCTCCGCACGTACCCGGTGTACAGCGTCACGGGCGTGGGAGTGGAGGGGGTCGAGGGCGTGGAGGGTGTGGAGGGGGTCGAGGAGGGCGCCGGGGGGGAGGCGGAGGGCGCGGGTGAGGGCGCGGGGGGGTGGACGGGGGAGTTCACGTACGCGGCGGGAGATGCGCTGGcctcgcccgcgcccgcgcgcATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACTGCTGAGGGCGTGTCCCTCCCCCGCTCAACGCTGTACGCGCACTACCTGCGCCACTGTGCATCAAACCGCCTCGAGCCAGTGAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCGGTGTTCGTGGGGCTGCGCACGCGCCGGCTGGGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCCGCGCCAAGCCCGCGGTGCACCTGCCGCCCTCGCCCACGCTGCTGCTGACCAAGACCGATGTTATTGAGCCGCAGTGCGAGGTGCGAGAGCGCGCGGGCGAGCCGGAGCCAGCACTGGGCGTGGGGCTGGCGGGCGTGGGCGCGGCGCACCGGCAGTACCTGGGCGCGGTGGCGGCGCCCGACCCGCCGCCGCTCGTCGTCACCGACCTGCCGCCCGACGTGCCGGACGCCGCGCTGCAGGCGCTCAGGGAACATCACCGCGACCACGGCGTAGAGTTCCTGGAGGCGGTGGCGGCGCTCGACATAGGCGCGGTGGAGCGCGCGCGGCGCTCGTTCTGGCGCGCGGGCTCGGGCGCGCTGTGCCGGCGCGCGCTGTGCCGgctggcggcgcggcgcggcgtggcGCGCTGGCTGCGCGCGGCCGACCTGCAGCTGCACCAGCGCGCGGTGGACCTGCTGCTGCCGGACGTGCTGCGGCCGATACCCTCGCAGCTCACACagGCAATCCGCAACTTCGCAAAAGGCCTCGAAGCGGCGCTAGCGTCAGCGTCGACGGGCGCGCCCGCgctggcggcgcgcgcgcaggcggcggcggcggcggcgctggcggGCGCGCTGCGGCGGTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCAGGTGCAGATACAACAGATGGTGGCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCGCGTGCGGCACCGCGCCGCACGCCGCGCGCCTCGAGCAGGACTTTAAGGCGACGCTCGGGCGCGGCGCCACGCTGGAGCAGTGGGCGGCGTGGCTGGACGGCTGCGTGCGCGCCGCGCTGGCGCCGCACGAGCGCCGCGCGGACTACacggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATACGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGGTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGTCGTTCCTGCTGGAGCGCCGCGTGGCCGCCGCCACCCGCCGCCCGCCCATCGCCGTCATGCAGCGCACGCTGgACGAAGACGAGGATTTACTGGAGGACGGGGAGCGAGAGCGCGACGCGGACGACGGCGGGGAGGGGGGCGAGGGGGACGACGGGGgtgaaggagcgggagagggggACGGAGGCGAGGGGGGCGAGGGCGGCGAGCAGGAGTGGGAGTGGGCGGACGACGACGAGGACGAGGATGAGCCGATCGAAAACAAGAAGCCGCGTCTTGAGGAGTAA
- Protein Sequence
- MAAQLAAPAQGDGAGGAGGAGGAGGASPSAVRELIVIPELPSSLHLQHAIQQVSTVEVNGDSSGHSSPNSEAQHAYITVSRGLDLSVLLGAIQSLREEQRAAWEEQRAAWEEQRAAREEWRAAVQSLENNLRRSLKDDILGALDVGVAKITGVSQASRRVSEEGSDGGAAGGMPPRSAADRAAMSAVEESKEERPESEEDGLGSKEDIQCTREDVDDRKMGVAETCSDCVPTELGLGHGHSDPVVVAASLPLVEPAELSLPDDTIRAGLPSALQLKAVVCASQMHEHLLSDGSRPGFLISDGADVGKGRATAGIILENYLKGRRRAIWASGFNDLKYDAERDLRDTGAGKVEDHPSNKFEYVKNLSAVNGIVKRGMVCSAYSALIGKMQADIRYRTRFKQLLQWCGEGMPFPTFMDFNKTSGVSGVYCPPRRDAPVLARWCVCVGGPLPVAWEISIEMEVPRYRAFFPCEGTNGVNYHVQYVEPQDIYAQGHQPHMETLRTYPVYSVTGVGVEGVEGVEGVEGVEEGAGGEAEGAGEGAGGWTGEFTYAAGDALASPAPARMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCASNRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPAVHLPPSPTLLLTKTDVIEPQCEVRERAGEPEPALGVGLAGVGAAHRQYLGAVAAPDPPPLVVTDLPPDVPDAALQALREHHRDHGVEFLEAVAALDIGAVERARRSFWRAGSGALCRRALCRLAARRGVARWLRAADLQLHQRAVDLLLPDVLRPIPSQLTQAIRNFAKGLEAALASASTGAPALAARAQAAAAAALAGALRRYTSLNHLAQAARAVLTNQVQIQQMVADLNRVDFRVVREQAAWACACGTAPHAARLEQDFKATLGRGATLEQWAAWLDGCVRAALAPHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSFLLERRVAAATRRPPIAVMQRTLDEDEDLLEDGERERDADDGGEGGEGDDGGEGAGEGDGGEGGEGGEQEWEWADDDEDEDEPIENKKPRLEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -