Tbat008349.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990511.1:1872213-1876944[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0006 0.045 14.7 4.7 1 23 148 171 148 171 0.97 2 17 0.00022 0.017 16.0 1.2 1 23 180 203 180 203 0.96 3 17 0.0032 0.24 12.4 0.9 2 23 216 238 215 238 0.97 4 17 0.00055 0.041 14.8 1.1 1 23 247 270 247 270 0.97 5 17 6.9e-05 0.0051 17.7 1.5 1 23 282 305 282 305 0.96 6 17 0.00018 0.014 16.3 0.5 2 23 337 359 336 359 0.97 7 17 0.0012 0.088 13.8 1.2 2 23 369 391 368 391 0.96 8 17 0.076 5.7 8.1 1.0 3 19 397 413 395 416 0.92 9 17 0.00049 0.037 15.0 0.4 2 21 421 440 420 443 0.94 10 17 0.2 15 6.8 1.8 3 23 453 474 452 474 0.91 11 17 0.00058 0.044 14.7 3.7 1 23 479 502 479 502 0.94 12 17 7.1e-05 0.0053 17.6 1.2 2 23 514 536 513 536 0.95 13 17 1.2 90 4.3 1.3 1 23 560 583 560 583 0.90 14 17 0.64 48 5.2 0.2 2 23 590 611 589 611 0.90 15 17 0.00048 0.036 15.0 1.9 2 23 617 638 616 638 0.97 16 17 0.012 0.92 10.6 0.2 1 23 704 726 704 726 0.97 17 17 0.077 5.8 8.0 1.9 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGACATCTTTACAACAAGAACAAGAAGGTAACACTGAAAAGGGTGAGGATGAAAACTCACGAAAGGACCCAACCTCCTTTCTACCAGAAGAGGCAATGACGTACGAGATAAAAAAGAAGAAGAAGAAAAAAAAGAAGAAACAAGAAGATCCGTTTAAAGATATAGAAGAGAAACAGTTAGTCACTATTATTGAGACGGGAGAATTTGATCCAGAAGTCAATATTAAAGTTGAAAATATTGAAGTGGAATTGGATTTTAATGATTTCGCCGACACTGCAGGGCTTATGGTGGAAGGCCCCCACAGCGAAGACAGTCAAGAACCCGAAGTTAAGATAGAACAACAGAATCACGAAGCAGTCTTACTGACTTTCGAGAGCGTCATCAACGAGAGAACGGTGCTTACTTTTGGCCAAGCTGTGCCAGCCCAGGCCACGCCCTCACACGTCTGTAAAGTATGCCATCTAGTCTTTCAGTCACCCAAAACGTTACGGATGCACCAGCGAAGGAAGCATAAAGTTTTCAGACGTTACTTCACCCACATATGCAATTACTGTGGAATGTCATATGACATGAAGAATAGTTTAGTTGCTCATATTAAGAGGAAACACGGACCAGATGTGTCCCCAGATGATACAGCGGAGCAAACTTGTGAAATCTGCGCTCTAGTCTTCAAGGGACGTAATAGATTACGTATGCACATGAGGAGGAAGCATGGTGCGTTCGAAGACTCATTCATACACGTGTGTCAGGATTGTGGACTAACTTATGACAAATACAGAAGTTTGATTGTCCATATACAGAGGAAGCATTCTAACGAAAATAAGCCAGAGATGAGCGAGTGGTTCAACTGTCCATTCTGCCCAAAAGTATTCACAAAACGAGAAACATATGTCAGACATGTTCAAAGGAAACATAAGGTCACGGACGAGGAAAGTCTCAAGAATGAGGAAGAAAAAGCCGATCAAAAGTTCCTTGACAAATACAGGAATGAAGAAACCGGTGAAATTACTTGCAGCGAGTGTCCATTGGTGTTTTCGTCTATCAACTTTTTGAAATTGCACATGAGAAGGAAACATAACGCGTTGAAGGAAGCTTTCCGGTTGAAATGTAGGATTTGTAATCTGTCCTATGATAAAGTTGAGAGTTTAAAACGCCATGTGCGGAGGAAACACGACCAGGGATCCCATTGTGAAGTCTGCAATAAACAATTTGATACACGAGCGATGTATTTGAACCATTCCCACGTGAGATTGATAAAGGAGTGCTCAATTTGTGGTTTAATATTCGCCTCCCAGGGTGGTCTGGCAAAGCATATAAGGTGTACGCACAAAATTGACACAGTCAAAACTGTTTTTTGCAGCATATGCAACGAAGGCTTTCATGACAAACGACAATTAAAACCTCATTTCCTAAAAGTGCATTTAAAAGTATCCTACAATTGTAGATTTTGTTCTAAAGCATTCAAAACGAATGAAACTTATCGCAGGCATATTATGTTTAAGCATGCAACCAGCACAGCTGTGACAGAGAACATGCAGAAGTGTGAACAGTGTCCCGAGACGTTTAAAGACGAGTTTGAACTGTGCCGTCATATTAATTTAGTTCATGGTAAAGATAGAGATTTGTCTAAGCCTTTGCTTGAAGTTAAAAAGGAAGATGTCGATATAAAGGATTCGTTCCAATGCACAAAGTGTACAGATAACTTCTTATCATGGGAACAACTGAAGCTACATTTTGAACAAAACCACCAATCCTTCGAAGAGACACAGTGTCAAATTTGCGGTGAACTCATACCGAGCAACGAATTACAGAAACACATTAAGAATTTACACACAGACACGACACTGCAGTGTAAATATTGTGAATTTAAGACTACATCAAGAGTGAGTTTGACTCAGCACATGTTAAGGCACAAGAATGCGGCAACAATGCATTGCGATTATCCAAATTGCAGGTACAAATCCTTTTATAAAGAGGCAATGGACAAACATAAGCGTAAACACGCTGATTTGGGTGTAAAATTGCAATGTACACAGTGTCCGTTTCAATCTATGAATAAATATATCTTAAAGTATCATGAAGAGGCACACGAGACAGGAAAAAAACGTTATATGTGCAATCAATGTGATTATGCAACAATATTGCCAGCAAACCTCGTTCAGCATAAGTATAAGCATTCGTCAGAGAAGCGGTTCAAATGTGAAGTCTGCCCATTTGCAACGAAATATAATACGTCGCTGAGATTTCATGTCAGAAAGAAACACTGTGATCTACCTACTTTCAGTTGA
- Protein Sequence
- MTSLQQEQEGNTEKGEDENSRKDPTSFLPEEAMTYEIKKKKKKKKKKQEDPFKDIEEKQLVTIIETGEFDPEVNIKVENIEVELDFNDFADTAGLMVEGPHSEDSQEPEVKIEQQNHEAVLLTFESVINERTVLTFGQAVPAQATPSHVCKVCHLVFQSPKTLRMHQRRKHKVFRRYFTHICNYCGMSYDMKNSLVAHIKRKHGPDVSPDDTAEQTCEICALVFKGRNRLRMHMRRKHGAFEDSFIHVCQDCGLTYDKYRSLIVHIQRKHSNENKPEMSEWFNCPFCPKVFTKRETYVRHVQRKHKVTDEESLKNEEEKADQKFLDKYRNEETGEITCSECPLVFSSINFLKLHMRRKHNALKEAFRLKCRICNLSYDKVESLKRHVRRKHDQGSHCEVCNKQFDTRAMYLNHSHVRLIKECSICGLIFASQGGLAKHIRCTHKIDTVKTVFCSICNEGFHDKRQLKPHFLKVHLKVSYNCRFCSKAFKTNETYRRHIMFKHATSTAVTENMQKCEQCPETFKDEFELCRHINLVHGKDRDLSKPLLEVKKEDVDIKDSFQCTKCTDNFLSWEQLKLHFEQNHQSFEETQCQICGELIPSNELQKHIKNLHTDTTLQCKYCEFKTTSRVSLTQHMLRHKNAATMHCDYPNCRYKSFYKEAMDKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCNQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416141;
- 90% Identity
- -
- 80% Identity
- -