Tbat003616.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990498.1:2565636-2578703[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00026 0.019 15.9 3.4 1 23 241 263 241 263 0.98 2 11 0.0014 0.11 13.5 9.5 1 23 269 291 269 291 0.96 3 11 0.00024 0.018 15.9 6.5 1 23 296 318 296 318 0.96 4 11 0.0016 0.12 13.3 6.9 1 23 324 346 324 346 0.98 5 11 0.00054 0.04 14.8 0.6 1 23 352 374 352 374 0.96 6 11 6.8e-06 0.00051 20.8 0.9 1 23 380 402 380 402 0.97 7 11 8.2e-05 0.0062 17.4 0.0 1 23 408 430 408 430 0.97 8 11 5.3e-05 0.004 18.0 0.4 1 23 435 457 435 457 0.96 9 11 2.6e-05 0.0019 19.0 0.4 1 23 479 501 479 501 0.97 10 11 6.8e-05 0.0051 17.7 1.4 1 23 528 550 528 550 0.96 11 11 2.8e-05 0.0021 18.9 4.3 1 23 560 582 560 582 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCGACTCCTAATAATGTGTCGGGATTCGGTTACTCGTGGGGGTTCACGAGTTCCGCGGATCTCACGAAGGGCGAGGTGGAAACTCCAAGCAGCCTTAGTTATACCCTGGGAAGTACAGTATCCCCAGAGACAACTTTGACTGTTATGTCCCATAAGACACCTCAAGTCCAAGAGAAAGTTGGTACGGTTGCGGTAGCGGTCTCAAACTCGGGAGCTCAGGTCACGAGGGTTGTAACCACTGGTACACCCGTTACCAGGAGAGCTATGTTTGTGTTGAACGAAGCACCCGCACATACATTGAACAGGGTGTCACAACAAAACCAAACCGCAACTATACACACAACAAACCTGGCATCAAAACCGTTTATGACACCGTTGGGACCTATCCAGCTTACGGCGGAAGAATGCAACGAGATCCTAATGAAGCGTGCCCTCCAGGCTCAGGGTATCGCTACACCAGTGATTGATGCGTCACAATTAAACCATACACTACTGAATGGCAGCTTAAAGACATTAACCGAGGCAACTGCACAGCAACCGCAAGCTGATCCCCTGCAGACAACTACAGTGCATCAGCATCACTTGTTGCATACTAAGCAAGAGCCTGGCACTACGAATAATTCACCAAAAACGGTATATTCTCAGACGGATCTCCTGAACACTAACACGGTGATGACGACGGCGCCGCCCGCCGCGGTGAAGGAGCGGCCCTACTCGTGCGACGAGTGCGGCAAGTCCTTCCTGCTGAAACACCATCTCACTACGCACGCGAGAGTACATACAGGTGAGCGGCCCCACGTTTGCGTGCACTGCGGCAAGGCGTTCTCCCACAAGCACTGTCTCAACACGCACCTGTTACTGCACAGTGAACGGCCCCACGTATGCGCCCACTGCGGCAAGGCGTTCGCGAGGAAGCACTGCCTCAACACGCATCTGTTGTTGCACTCCGCCGAGCGACCGTACAGGTGTCACGAGTGTAAGATGGCCTTCACGCTCAAGCATCACCTTGTAACGCATTCGAGGGTTCACAGCCGAGACCGGCCGTTTGTATGCGGCGAGTGTGGGCGAGGGTTTCCTCTGAAGCGACACCTCGTCACCCACGGCAAGTACCACGCCGGCGAGAGGCCGTACGTCTGCAGCGACTGTGGGGAAAGCTTCGCACAAAAGGAGCACCTAGTGATGCACAGCCGTTTCCACGGGTCGTTGACCCCGTTCGCGTGCGCGGACTGCGGCGCGGCGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTCCACGGCCGCGTGCCGCACGCCTGCCCTGTATGCGGCAAGGAGTTCCTGCAGAAGCGCACTCTGGTCGCCCACATGAAAATACACACAGGGGAAGGTGTTGTAATCGGCGCCGATGGTCAGATAGTGTCTGAGAAAGCGACGCCCGGTTACGCGTGTCCGGAATGTGGTTCCTGTTTCAATACTAAGGAGGCGCTGTCCCTGCACGTGCGTCTGCACGCCGGCGACCGCACTAATGTTGTACATACACAAGTTATAGCAACGAATCACCACGTAACGCCGCCGCGGCCAAAGATACACTTCTGCGGCGATTGTGGCAAAGGATTTGCGGCTAAACACGGCTTATTAGCGCATCAAAGGAGACACCCGGACGGCAGTTGCACGCTACGTACACACGTGTGCGACCAGTGCGGTAAAGCGTTCTTCCAGAAGAACCACCTCATGCTGCACCAGCGCCAGCACATGGACCTGCCCGGTCGTGCCGTCTCAACTCGCACGTACAAGCAAGAGAAGGACACGTATAAGGAGGAGGAGTTTGTTGTGCTGTTTGAGGTAACGAACCGGTCGGGGCAGGTGATCGGCAACCAGATCGTGGTGGGCACGGTGGGCACGCGGCGGCTGGTGGCGCCGCAGCTGCACCTCCTGGGCCGCGACAAGCACAGCGCCATCCACCACCACATACAGAAGCACGCCAGGCAACACACTACCAGTGGCGACGTGAAGGAAGTGGGTGGTCTAGTACTATCCGCGGGCCGCGGGACCGGCCTCATCAAGTACGAGATCTCACTGCCCCAGCCCACGTCCGTCGTACAAGTGCAACAGCTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGSTVSPETTLTVMSHKTPQVQEKVGTVAVAVSNSGAQVTRVVTTGTPVTRRAMFVLNEAPAHTLNRVSQQNQTATIHTTNLASKPFMTPLGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGSLKTLTEATAQQPQADPLQTTTVHQHHLLHTKQEPGTTNNSPKTVYSQTDLLNTNTVMTTAPPAAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKAFSHKHCLNTHLLLHSERPHVCAHCGKAFARKHCLNTHLLLHSAERPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHGKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLTPFACADCGAAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVIGADGQIVSEKATPGYACPECGSCFNTKEALSLHVRLHAGDRTNVVHTQVIATNHHVTPPRPKIHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPGRAVSTRTYKQEKDTYKEEEFVVLFEVTNRSGQVIGNQIVVGTVGTRRLVAPQLHLLGRDKHSAIHHHIQKHARQHTTSGDVKEVGGLVLSAGRGTGLIKYEISLPQPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00186507; iTF_00761916;
- 90% Identity
- iTF_00761916;
- 80% Identity
- -