Basic Information

Insect: Autographa pulchrina
Gene Symbol: -
Assembly: GCA_905475315.1
Location: FR997776.1:2760678-2776956[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 0.15 13.3 2.6 3 23 242 262 240 262 0.97

2 11 0.11 12 7.4 9.4 1 23 268 290 268 290 0.95

3 11 0.00022 0.022 15.9 6.5 1 23 295 317 295 317 0.96

4 11 0.0015 0.15 13.3 6.9 1 23 323 345 323 345 0.98

5 11 0.0003 0.031 15.5 1.5 1 23 351 373 351 373 0.97

6 11 6.2e-06 0.00064 20.8 0.9 1 23 379 401 379 401 0.97

7 11 1.4e-06 0.00014 22.9 0.1 1 23 407 429 407 429 0.98

8 11 4.4e-05 0.0046 18.1 0.7 1 23 434 456 434 456 0.96

9 11 2.4e-05 0.0024 19.0 0.4 1 23 478 500 478 500 0.97

10 11 6.2e-05 0.0064 17.6 1.4 1 23 560 582 560 582 0.96

11 11 2.5e-05 0.0026 18.9 4.3 1 23 592 614 592 614 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	0.15	13.3	2.6	3	23	242	262	240	262	0.97
2	11	0.11	12	7.4	9.4	1	23	268	290	268	290	0.95
3	11	0.00022	0.022	15.9	6.5	1	23	295	317	295	317	0.96
4	11	0.0015	0.15	13.3	6.9	1	23	323	345	323	345	0.98
5	11	0.0003	0.031	15.5	1.5	1	23	351	373	351	373	0.97
6	11	6.2e-06	0.00064	20.8	0.9	1	23	379	401	379	401	0.97
7	11	1.4e-06	0.00014	22.9	0.1	1	23	407	429	407	429	0.98
8	11	4.4e-05	0.0046	18.1	0.7	1	23	434	456	434	456	0.96
9	11	2.4e-05	0.0024	19.0	0.4	1	23	478	500	478	500	0.97
10	11	6.2e-05	0.0064	17.6	1.4	1	23	560	582	560	582	0.96
11	11	2.5e-05	0.0026	18.9	4.3	1	23	592	614	592	614	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACCCCTAACAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCGGCAGACCTTACGAAAGGCGAAGTGGAAACTCCGAGTAGTTTGAGTTATACCTTGGGGAATACGGTGTCACCAGAAACAACCCTGACGGTAATGTCCCATAAAACACCGCAAGTACAAGAAAAAGTTGGTGCGGTAACAGTGGCAGTATCGAACTCTGGGGCACAGCTAACAAGGGTAGTGACTGGTACACCAGTCTCAGGTCGACGGGCTATGTTTGTGGTCAATGAAGGTCCTACACATACTTTAAACAGAGTTACACAACAGAATCAGACTACTACTATTCATACGAATTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTAACTGCTGAAGAATGCAACGAGATACTGATGAAGCGAGCTCTGCAAGCGCAGGGCATCGCAACCCCTGTGATAGACGCGTCGCAGCTCAACCATACATTACTGAATGGTGGGCTGAAGAGCCTGGCGGAGGCTACCACACAGCAGACGCAAGCTGACTCCATACAGACTGCTACAGTACATCAACATCACTTGTTGCATACTAAACAGGAGCCTGGGACTGCTAATAATTCGCCTAAAGCGGTATATTCCCAGACGGAGCTGATGAACACGAACTCGGTGATGACAACAGCGCCCCCTGCCGCCGTCAAAGAGCGGCCCTACGGGTGCGAAGAGTGCGGAAAGTCGTTCTTACTCAAACATCACCTTACAACACACGCGAGAGTACATACTGGTGAGCGCCCGCACGCGTGCGTTCACTGCGCGAAGACATTCGCGCACAAGCATTGCCTCAACACACACCTATTACTGCACAGTGAGCGGCCGCATGTCTGCGCGCACTGCGGGAAGGCGTTCGCGAGGAAACACTGCCTCAACACGCACTTGTTGCTGCATTCCGCGGAACGCCCCTACAGGTGTCACGAGTGTAAGATGGCGTTCACCTTGAAACATCATCTGGTTACGCATTCGAGGGTGCACAGTCGTGAACGTCCATTCGTATGTAACGAGTGCGGGCGCGGGTTCCCGCTGAAGCGCCACCTGGTGACGCACAGCAAGTACCACGCCGGCGAGCGACCCTACGTGTGTAGCGATTGTGGAGAGAGTTTCGCGCAAAAGGAGCACCTGGTGATGCACAGCCGCTTCCACGGGTCGCTGTGCCCGTACGTGTGCCCGGACTGCGGCGTGACGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCCGCGTGCCACACGCCTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCATCACGCATATGAAAATACACACCGGAGAAGGCGCAGTTATAGGTGCGGACGGCCAAATAGTTACGGAAAAAACGACGCCAGGCTATGCATGTCCTGAGTGTGGATCATGTTTCAACACTAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTCACCGATCTCTGCGCGCTCACCGCCGCGCTGCAGCCCGGACTCGTTTCTGCACAACACAATCAACCTATACAGATTATTTCGTCAAACCCCAGCAATGTTGTACATACGCAAGTTATAGCAGCGAATCATCATGTAACGGCTCCTCGACCTAAAATCCATTTTTGTGGAGACTGCGGGAAAGGATTCGCGGCTAAACATGGTTTATTAGCTCATCAAAGAAGGCATCCAGACGGCAGCTGTACATTAAGAACGCACGTGTGTGACCAGTGTGGCAAGGCTTTCTTCCAGAAGAACCACCTAATGTTACATCAGAGACAACACATGGACTTACCTCCTAGAAATGTAACGAACAGATCGGGTCAAGTGATCGGTAACCAGATAGTGGTGGGCGCGGTGGGCGGCGGGCGGCGGCTGGTGGCCCCGCAGCTGCACATCGTGGGCCGCGACATCAAGCCCGCGCTCGCGCATCTCACGCACAAGCACCACGCAAGACAACTCACCACCAGCGGCGACGCGAAAGAAGTCGGCGGCTTGGTCCTATCGGCGGGCCGTACGGGCCTTATAAAGTACGAGATCTCTCTCCCGCCGCCGACGTCCGTCGTGCAGGTGCAGCAGCTCGACTGA
Protein Sequence: MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNSGAQLTRVVTGTPVSGRRAMFVVNEGPTHTLNRVTQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEATTQQTQADSIQTATVHQHHLLHTKQEPGTANNSPKAVYSQTELMNTNSVMTTAPPAAVKERPYGCEECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHSERPHVCAHCGKAFARKHCLNTHLLLHSAERPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLCPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLITHMKIHTGEGAVIGADGQIVTEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVSAQHNQPIQIISSNPSNVVHTQVIAANHHVTAPRPKIHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNVTNRSGQVIGNQIVVGAVGGGRRLVAPQLHIVGRDIKPALAHLTHKHHARQLTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01437319;
90% Identity: iTF_00185528;
80% Identity: -