Tsen021869.1
Basic Information
- Insect
- Thumatha senex
- Gene Symbol
- -
- Assembly
- GCA_948477245.1
- Location
- OX419752.1:1547672-1550998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5e-05 0.0015 19.8 0.4 1 21 108 128 108 129 0.94 2 19 3.7 3.7e+02 2.8 0.1 3 23 135 155 134 155 0.88 3 19 0.0072 0.72 11.4 0.6 2 23 161 183 160 183 0.94 4 19 0.05 5 8.7 0.0 2 23 189 210 189 210 0.90 5 19 3.4 3.4e+02 3.0 7.3 1 21 213 233 213 234 0.94 6 19 0.00024 0.024 16.0 0.2 1 23 247 270 247 270 0.92 7 19 3.1e-05 0.0032 18.8 2.4 1 23 276 298 276 298 0.98 8 19 2.6 2.6e+02 3.3 1.4 6 23 309 326 306 326 0.95 9 19 9.6 9.6e+02 1.5 0.9 1 23 332 355 332 355 0.79 10 19 0.0019 0.19 13.2 1.3 2 22 488 508 487 511 0.89 11 19 1.3 1.3e+02 4.3 0.0 3 23 515 536 514 536 0.95 12 19 0.04 4 9.0 2.9 1 23 541 564 541 564 0.94 13 19 1.6e-05 0.0016 19.7 0.5 2 23 570 591 569 591 0.96 14 19 2.2 2.2e+02 3.5 2.3 2 20 595 613 595 615 0.91 15 19 5.1e-06 0.00051 21.3 0.9 1 23 641 664 641 664 0.94 16 19 0.0038 0.38 12.3 0.6 1 23 670 692 670 692 0.95 17 19 0.064 6.4 8.4 0.1 1 23 698 720 698 720 0.97 18 19 0.0037 0.37 12.3 0.3 1 23 726 749 726 749 0.94 19 19 0.00017 0.018 16.5 1.5 2 23 756 778 755 778 0.95
Sequence Information
- Coding Sequence
- ATGGAGATGGACGGCGCTTTTCCCAGCGGGATTTGCAGCTCCTGTTTGGATGCTACCATGGCGGCCATAAACTTCAAGAACCTTTGCATGCTGTCGTCGCAACACTGGACAGAAGCAGCATCCTTCCTCTCCCAAATCCACCCACCTACAATAGAAGACAAGGCTTATTTTATCTTTTATAAGGATCAAAAGACTATAGTAAAATACCAAATTGATAAGGTTCCAACAAAGGAAGCAGCTCTGAAAAGGCTAAATAACAGCTATGACAAACAACCCGTGAAGACGCGTCGACAGAAACGCATCCACGATCCGAATGTCACTTGCAAATGTCCTGACTGTGGGAAGGTTTTCTCAATTCCCGATTATTTAAACTACCATTTAAGAAATTCGACTAACCGAGCGTGTAATAAATGCGGAGTTGTAATACCCAAGAAGAAAATGGCGAAACACATGTCTGTCGAACACAATATTTTAATGACCGTTTGTAATATTTGTCACCAGCTCTTTGCAAATGAAGTTCTCTTAAAAGATCACTTAAAAGATTCGCACGGGGAGAATAGTCCTACTTGCAGTGTCTGTGGCGTTGGTTTTGCAAACGACAGAGCTTTAAGAGCACATTCATATGCTCATTCGCTATTTCATTGCAAGTTTTGTAGTAGGAGCTTCGAAAACATAAAATGTTACAAGTATCACCAGAAACAGTGCAAAATTGTTGATGTTCCTGCGTCCAACACTACTTTTAGTTGTGATATCTGCGGGGTCACGTACTACCGAAAGCCGTCCCTACGTATTCATATCGTTCAAAAACATCTCAATGTGCTTCCATACGTTTGTCAAACGTGCGGTAAGAGAACTTCCACTCTGGCACATTTGAGATCGCACGAAAAAACCCATATGTCAGAACGGCAAATGTTTCATTGTTTTTGTGGAGCAAAGTTCCGAACTGATCTTGGATATCAGCTACATCTAAGAATACATACCGGAGAGAGGCCCTACGAGTGCGAATTTTGCGGAGACAGATTCTTGTCATCATCTAGACGATTGGATCACGTGAAAAGACGCCACAGAGGCTCTAAAGATATGCCACATGCCTGCGATCAATGCTCGGCTCGCTTTATGAAAGAAGATTCGTTAATACCGATCGGCGCGTGTGTAGCATGCGTCAGCATCGCTCTTGCTGCGCAGGAGTTCCGCGTGTTTGTCAAAAACTCACAGAAAACGTGGTGGAAAACCATAGACAATCTGAGCACGCTACCTTATTCAGCCAGCCCTCTACATTATTCAGCCAGCCCTGCTATCAAATCTATTTGCGCTTTCATAAAACCTGATGACTTATCAGTACAGACCTTCAAGGATTATACTCAAGGCGATGCCATCGCTGTACTAAACAGATTAAAAAACCGTGTCTCCAAAAAAACGATTGAAAGAAAACCAAGAGGAGCTCGGTCTGGACCTTCATGTAACTGCCCTGACTGTGGGAAGACATTCTTAAGTCCGTATTTTCTAAATATGCATTTGAAAAATAGTGGGCACAAAGAAGCGTGTCAAATTTGTGGCTCTGTTGTAATCAGAGGAAAAGAAATGAAAGATCACTTGTCGTCTGTCCATAACGAACCAGCATTTTTATGTAAACAGTGTCCAATCTTATTTAATAACATGATACAATTAAAAAAACACGTCAAAAAGTGTCATAAAGCAGGCGCTTTAACGTGTTCAGATTGTGGAAGAACATTCCCGAGACAGGCATCCTTTGAAACACATTCACAGATGCATGCAGTTAGGACTTGTCGAGCATGTGGTGTACAGTTCACCAACCGAGGTTGTTATAGAGAACATCGGTCCCATTGCGAGCCAGACGCAAAACCGAACGCCCAAAGCTTCCCCAGAAATCGCCGATCAAATATTCGTGATCCAGCCCAGTTTAGCTGCGATCACTGCGGCAAAACCTACAACTCTAGACCACAGCTCAAAAATCACATAATTTGGATCCACATGAACGTACGACCTCATCAGTGTCAATGGTGTGAAAAAAGGTTTTATACTGCTGGTCGTTTGGCTGAACATACTGTCGTTCATACGCGTGTTCGAAATTTTGAATGCGATATCTGTGGTGTGAAGTTAGTATCAAAGATGGCGGCTGTGTACCATAGACGAAGACACACGGGTGAACGGCCTTACGAGTGCGACGATTGTGGGGAAAAATTCATTTCTGCTTCCAGGAGATCGGAACATGCGAAACGTAGACACAATAAAGGCTTTAGATTACCATGTAATCAATGTTCGTCTAGTTTTGTTAGGAAACATGAACTAAAAAAGCATATAGAAAAAGCACATAGGACACCGGATCCTATAACTGGGGAATGGCGTATAATAGGAATGACAGATTCTTTTAATGGGAAATTCGGTTAA
- Protein Sequence
- MEMDGAFPSGICSSCLDATMAAINFKNLCMLSSQHWTEAASFLSQIHPPTIEDKAYFIFYKDQKTIVKYQIDKVPTKEAALKRLNNSYDKQPVKTRRQKRIHDPNVTCKCPDCGKVFSIPDYLNYHLRNSTNRACNKCGVVIPKKKMAKHMSVEHNILMTVCNICHQLFANEVLLKDHLKDSHGENSPTCSVCGVGFANDRALRAHSYAHSLFHCKFCSRSFENIKCYKYHQKQCKIVDVPASNTTFSCDICGVTYYRKPSLRIHIVQKHLNVLPYVCQTCGKRTSTLAHLRSHEKTHMSERQMFHCFCGAKFRTDLGYQLHLRIHTGERPYECEFCGDRFLSSSRRLDHVKRRHRGSKDMPHACDQCSARFMKEDSLIPIGACVACVSIALAAQEFRVFVKNSQKTWWKTIDNLSTLPYSASPLHYSASPAIKSICAFIKPDDLSVQTFKDYTQGDAIAVLNRLKNRVSKKTIERKPRGARSGPSCNCPDCGKTFLSPYFLNMHLKNSGHKEACQICGSVVIRGKEMKDHLSSVHNEPAFLCKQCPILFNNMIQLKKHVKKCHKAGALTCSDCGRTFPRQASFETHSQMHAVRTCRACGVQFTNRGCYREHRSHCEPDAKPNAQSFPRNRRSNIRDPAQFSCDHCGKTYNSRPQLKNHIIWIHMNVRPHQCQWCEKRFYTAGRLAEHTVVHTRVRNFECDICGVKLVSKMAAVYHRRRHTGERPYECDDCGEKFISASRRSEHAKRRHNKGFRLPCNQCSSSFVRKHELKKHIEKAHRTPDPITGEWRIIGMTDSFNGKFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492234;
- 90% Identity
- -
- 80% Identity
- -