Tsen027681.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thumatha senex
Gene Symbol
-
Assembly
GCA_948477245.1
Location
OX419751.1:15793108-15797194[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00011 0.011 17.1 0.6 1 22 229 250 229 250 0.96
2 17 0.0055 0.56 11.7 6.9 1 23 269 291 269 291 0.98
3 17 2.1e-05 0.0021 19.3 0.1 1 23 297 319 297 319 0.99
4 17 6.5e-06 0.00066 20.9 1.1 1 23 325 347 325 347 0.98
5 17 0.00056 0.056 14.9 0.4 1 20 353 372 353 376 0.94
6 17 0.00089 0.09 14.2 5.7 1 23 383 404 383 404 0.98
7 17 8e-06 0.00081 20.7 3.8 1 23 408 430 408 430 0.99
8 17 0.00023 0.023 16.1 5.2 1 23 436 459 436 459 0.97
9 17 1.8e-08 1.8e-06 29.0 2.1 1 23 465 487 465 487 0.99
10 17 3 3e+02 3.1 1.9 1 14 493 506 493 507 0.85
11 17 0.026 2.7 9.6 4.8 1 23 516 538 516 538 0.96
12 17 3.5e-06 0.00035 21.8 2.1 1 23 543 565 543 565 0.99
13 17 0.00013 0.013 16.9 4.1 1 23 571 593 571 593 0.98
14 17 0.023 2.3 9.8 1.5 2 23 600 622 599 622 0.92
15 17 0.00018 0.018 16.4 1.6 1 21 628 648 628 649 0.96
16 17 0.07 7 8.3 3.4 1 23 656 678 656 678 0.95
17 17 4.8e-05 0.0049 18.2 0.8 1 23 684 706 684 706 0.99

Sequence Information

Coding Sequence
ATGGAAGTGGAATCACTTGGCTGCACCCGCCCGAGGAGCACTCCCCTGACTCACCTTGCTTCAGAGATTTTCACTGAACCAGAGTATGAAGATTCCGAAGACGTCACTCCTCTTATTATCTTGCAGCATGAAGAGGTTGATGCTGAACCTAGTGTTCGTGAGTGTGTCTCTGATGCCGAAGTACAAAGGAAGGACTACATAGATATTTTCAAACTTCCAGTCGTGAAATTGGAACGAATTGATGACAGAGGCAGTCATTTGTATAAAACATTTGAAAAATATACGACAGCATCTGTGAATAAAATCCGTTCTTTTAATGATAACAAATTAGAATATTCCGATGATGAATTATCTGACATAAAGGATTACTTTAAAGCATGTAGTGACGATAAATCAAATACTACTGTTAAGCTTCAATGCGATGAGCTCGACGTAGACATCGGTTTAAAACTAGCTGTTGTTAAATTAGAAAGAATTGATGACAAAGCCAATCATTTATATAAATTATTCGAGAAATACAATACCAAAGATGTAAAGAACACGATTTTTGTTGATAGTACAACAAAAACAGAAAGTACAGAACGTTATACAAGTTATTCATTTGATTATAGAATACTACAAGGTCATGAAGGTGTCAAAGTATCAGACGTAAAGCATGATTCAAGTGCTGATAACGACAATAGACATCAATGCAATGATTGTGGGGCTACTTACAAACGCAGAAATGGTTTGCTAGCTCATAAGCGTACGCCATGCTTCGGTAAAAGACCTCGCGCTCGATTACCTCCTATAATTAAAACTACATACGAATGTGTTGTGTGTCACGAAAAGTTTCATAACAAAACTACGTTTAAAAATCACACTCGCTCCCACACTGGTAGCAAACGTTATCAGTGTAGTATTTGCGACAAAGGCTATAATGAAAAAGGAGGATGGATAAATCATATGCGCATACACACTGGAGAAAGACCATATAGTTGTGACCAATGCGATAAACAATTTCGCGATAAAAGCGTCTTAATGGCACACAAAAATACGCACATCAAAGAAAAAATATACCAGTGTGATGTGTGTAACAAGACTTTTGTAAACAAAATGTATGTAAGGTTGCACCTGTGGAACGTGCATTATTCAAATATTCCATCACATCAATGTAAAATATGTAAAAAATTCTTCAAGAAAAGATCCTTAAATACACACATGAATATACACTCAGGTAAATATCAGTGTAGCGTGTGTAAGAAATGTTTGAGTTCTAAAACCCAGCTGCAAACTCATATGAACATACACAATGATGTAAAACCTTATCACTGTACAATGTGTGAAAAGGTTTTTAGAAGAGATAATTGTTTAAAACGTCACATCATGAAGGCTCATACTAATGAACGGCCATACCAATGTTCTCACTGCGATAAAGGGTTTGTCACCAGCGGTAATTTGACTCAACACATGCGCATGCACACTGGCGAACGACCTTACAAGTGTGACGTGTGTAACAAATATAGTAGCTACAAGCATGATCATAGCGATGAAGCTCAAAAGTTGCACCAATGTAATGTATGCAAGAGATACTACAAACGTGAAAGTTTAAAATCCCACATGCGTCTGAAGCATGCGGAACATATATATAAGTGTGATGTATGTAAAAAGGGGTTTAGTTCTAATTATCAATTTATTGTACACACGCGTAGACACACTGGTGAGAAACCTTTTGAATGTGATGTATGTAAGAAATGTTTTATAGAGAAGAAAATGTTAACTGAACACATGCATATACACATGAGAGATATATCTGTTGAATGTCATATTTGCAAGAAAAGAATGTCAAGTCTTAAACAGTTGAAAGTACATAATATGTACATACATAGTGATATAAAACCGTATCAATGTGAAGTATGCAATCAAACATTCCGTTACAAACTTAATTTAGATAGACATATTTGTGAACGAAATAAAGATAAACTGTATGAGTGTAAGATATGTAACAAACTGTTTAACAACATGCATGTTTTCAAGTACCACGGCCTTAAACACACCGGCGAGAAGCCCTATCAGTGTGATTTATGTAAGAAGAGCTTCGCATTGAGGATATCGATGATTAACCATCTTCGTACTCACGCTAATAATGTGAAGTGA
Protein Sequence
MEVESLGCTRPRSTPLTHLASEIFTEPEYEDSEDVTPLIILQHEEVDAEPSVRECVSDAEVQRKDYIDIFKLPVVKLERIDDRGSHLYKTFEKYTTASVNKIRSFNDNKLEYSDDELSDIKDYFKACSDDKSNTTVKLQCDELDVDIGLKLAVVKLERIDDKANHLYKLFEKYNTKDVKNTIFVDSTTKTESTERYTSYSFDYRILQGHEGVKVSDVKHDSSADNDNRHQCNDCGATYKRRNGLLAHKRTPCFGKRPRARLPPIIKTTYECVVCHEKFHNKTTFKNHTRSHTGSKRYQCSICDKGYNEKGGWINHMRIHTGERPYSCDQCDKQFRDKSVLMAHKNTHIKEKIYQCDVCNKTFVNKMYVRLHLWNVHYSNIPSHQCKICKKFFKKRSLNTHMNIHSGKYQCSVCKKCLSSKTQLQTHMNIHNDVKPYHCTMCEKVFRRDNCLKRHIMKAHTNERPYQCSHCDKGFVTSGNLTQHMRMHTGERPYKCDVCNKYSSYKHDHSDEAQKLHQCNVCKRYYKRESLKSHMRLKHAEHIYKCDVCKKGFSSNYQFIVHTRRHTGEKPFECDVCKKCFIEKKMLTEHMHIHMRDISVECHICKKRMSSLKQLKVHNMYIHSDIKPYQCEVCNQTFRYKLNLDRHICERNKDKLYECKICNKLFNNMHVFKYHGLKHTGEKPYQCDLCKKSFALRISMINHLRTHANNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01436344;
90% Identity
-
80% Identity
-