Tsen027679.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thumatha senex
Gene Symbol
-
Assembly
GCA_948477245.1
Location
OX419751.1:15767876-15773902[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00064 0.064 14.7 2.0 1 22 230 251 230 251 0.96
2 17 0.52 52 5.5 6.6 1 23 270 292 270 292 0.98
3 17 4.9e-05 0.005 18.2 0.2 1 23 298 320 298 320 0.99
4 17 1.8e-06 0.00018 22.7 1.9 1 23 326 348 326 348 0.98
5 17 5.1e-06 0.00051 21.3 0.9 1 23 354 377 354 377 0.97
6 17 0.00089 0.09 14.2 4.1 1 23 384 406 384 406 0.98
7 17 1.5e-06 0.00015 22.9 1.8 1 23 410 432 410 432 0.99
8 17 1.5e-05 0.0015 19.8 3.2 1 23 438 461 438 461 0.98
9 17 1.8e-08 1.8e-06 29.0 2.1 1 23 467 489 467 489 0.99
10 17 5.8 5.8e+02 2.2 2.1 1 14 495 508 495 509 0.86
11 17 0.017 1.7 10.2 5.3 1 23 518 540 518 540 0.96
12 17 3.3e-06 0.00033 21.9 1.9 1 23 545 567 545 567 0.99
13 17 3.5e-06 0.00035 21.8 2.2 1 23 573 595 573 595 0.98
14 17 0.0025 0.25 12.8 1.1 2 23 602 624 601 624 0.94
15 17 0.00018 0.018 16.4 1.6 1 21 630 650 630 651 0.96
16 17 0.07 7 8.3 3.4 1 23 658 680 658 680 0.95
17 17 4.9e-05 0.0049 18.2 0.8 1 23 686 708 686 708 0.99

Sequence Information

Coding Sequence
ATGCGAGATGCTTCTGCATATGAAGGTGCCGCAGTCGACCGCGTGAAGAGCGAATCGTACGACCTTGACGCAGAGGTTTGCGCCGAGCCAGACCACGAGCACTCCGAGGATGATACACCTCTCATTATCTTGAAGAATGAAGAGTTTGATACAGAAACAAGTACTTGTGAGCCTGTCCTCGAAGCAGAAGGACAAAGAAATGACCACATCGATACTTTAAAACTCGCAATTGTGAAATTGGAAAGACTTGATGACAAAGGCAGTCGTTTGTATAAATTCTATGAAAAATATACGAAAGCACATATTGATAAAAAGTGTATTAAAATCCATTCATTTGATGATAATAATTTAGAATATTCTGACGATGAATTCGCCGACATAAAGGATGACTTAAAGGCTTATAGTGACGATAAATCGAGTACTAATGTTAAGCTTGACGTAGACATCGGTTTAAAACTCGCTGTTGTTAAATTAGAAAGAATTGATGACAAAGCCAATCATTTATATAAATTATTTAGGAACAATACCAAAGATGTAAAAAACATGATTTTTGTTGATAGTACAACAAAAACAGAAAGTATGAAACGTGATACAAGTTATTCAGTTGATTATAGAACATTACAAGGTCATGAAGATGTCAAAGTAGCAGACGTAAAGCATAATTCAAGTGCTGATAATGACAATAGACATCAATGCAATGATTGTGGGGTTACTTACAAACACAAAAACAGTTTGCTAGGTCACAAGCGTACGCCATGCTTCGGTAAAAGACCACGCGCACGATTACCTCCTGTAACTAAAACTACTTACCAGTGTGCTGTTTGTCACGAAAAGTTCCATAACAGAACCATTTTCAAAAAACACAGTCGCTCCCATACTGGCAGCAAACGGTATCAGTGTGGTATGTGCGACAAAGGCTATAATTATAAAGTGGGTTGGATAAATCATATGCGTATACACACTGGAGAAAGACCATATAGTTGTGACCAATGCGATAAACAATTTCGCGATAAAAGCACGTTAATGGTACACAAAAATACGCATATCAATGAAAGAATATACCAGTGTGATGTGTGTAATAAGACTTTTGTGACCAAAATGCGTCTAAGGATACACCTGCGGAACGTGCATTATTCGACGGTTCCAACACATCAATGTAAAGTATGTAAGAAATATTTCAAGATAAAAAAATCTTTAGATTCACACATGAATATACACTCTGGTAAATATCAGTGTAGCGTGTGTAAGAAATGTTTGAGTTCTAAAGCCCAACTGCAAGCTCATATGAACATACACAATGATGTAAATCCGTATCAGTGTACAATGTGTGAAAAGGTTTTTAGAAGAGATAATTGTTTAAAACGTCACATCATGAAGGCGCATACTGATGAACGGCCATACCAATGTTCTCACTGCGATAAAGGGTTTGTCACCAGCGGTAATTTGACTCAACACATGCGCATGCACACTGGCGAACGACCTTACAAATGTGATGTGTGTAGCAAATATACTAGCTACAAACATGACCACAGCGATGAAGCTCAAAAGTTGCACCAATGTAATGTATGCAAGAGATACTACAAACGGAGAAGTTTAAAATCCCACATGCGAATGATGCATTCGGAACACGTATATCAGTGTGATGTATGTAAAAAGGGTTTTAGTTCTAATTATCAATTTATTGTACACACGCGTAAACACACTGGCGAGAAACCTTTTGAATGTGATGTATGTAAGAAAGCTTTTATAGAGAAGAAAAATCTAAGAAAGCACATGCATATACACATAGGAGATATGTCTGTCGAATGTCATATTTGCAAGAAAAAAATATCAACACTCGAACAGTTGAAGATACACAATATGCGCATACACAATGATATAAAACCGTATCAGTGTGAAGTGTGCAATCAAACATTCCGTTACAAACTTAATTTAGATAGACATATTTGTGAACGAAATAAAGATAAACTGTATGAGTGTAAGATATGTAACAAACTGTTTAACAACATGCATGTTTTCAAGTACCACGGCCTTAAACACACCGGCGAGAAGCCCTATCAGTGTGATTTATGTAAGAAGAGCTTCGCATTGAGGATATCGATGATTAACCATCTTCGTACTCACGCTAATAATGTGAAGTGA
Protein Sequence
MRDASAYEGAAVDRVKSESYDLDAEVCAEPDHEHSEDDTPLIILKNEEFDTETSTCEPVLEAEGQRNDHIDTLKLAIVKLERLDDKGSRLYKFYEKYTKAHIDKKCIKIHSFDDNNLEYSDDEFADIKDDLKAYSDDKSSTNVKLDVDIGLKLAVVKLERIDDKANHLYKLFRNNTKDVKNMIFVDSTTKTESMKRDTSYSVDYRTLQGHEDVKVADVKHNSSADNDNRHQCNDCGVTYKHKNSLLGHKRTPCFGKRPRARLPPVTKTTYQCAVCHEKFHNRTIFKKHSRSHTGSKRYQCGMCDKGYNYKVGWINHMRIHTGERPYSCDQCDKQFRDKSTLMVHKNTHINERIYQCDVCNKTFVTKMRLRIHLRNVHYSTVPTHQCKVCKKYFKIKKSLDSHMNIHSGKYQCSVCKKCLSSKAQLQAHMNIHNDVNPYQCTMCEKVFRRDNCLKRHIMKAHTDERPYQCSHCDKGFVTSGNLTQHMRMHTGERPYKCDVCSKYTSYKHDHSDEAQKLHQCNVCKRYYKRRSLKSHMRMMHSEHVYQCDVCKKGFSSNYQFIVHTRKHTGEKPFECDVCKKAFIEKKNLRKHMHIHIGDMSVECHICKKKISTLEQLKIHNMRIHNDIKPYQCEVCNQTFRYKLNLDRHICERNKDKLYECKICNKLFNNMHVFKYHGLKHTGEKPYQCDLCKKSFALRISMINHLRTHANNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01436345;
90% Identity
-
80% Identity
-