Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:9934621-9941503[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.018 3.3 7.6 0.2 8 46 13 52 8 54 0.80

2 13 0.0049 0.9 9.4 0.3 21 45 55 79 51 83 0.91

3 13 0.37 68 3.4 0.2 21 52 83 114 79 116 0.86

4 13 0.11 20 5.1 0.0 22 46 140 164 128 170 0.86

5 13 0.093 17 5.3 0.0 22 45 196 219 192 227 0.85

6 13 4.7 8.5e+02 -0.2 0.0 21 45 223 247 218 254 0.85

7 13 0.13 24 4.8 0.0 21 52 251 282 246 284 0.77

8 13 7.8 1.4e+03 -0.9 0.1 22 45 336 359 330 366 0.84

9 13 0.35 64 3.4 0.1 21 45 363 387 360 390 0.90

10 13 3.7 6.8e+02 0.2 0.0 22 44 392 414 389 417 0.86

11 13 0.091 17 5.3 0.1 21 45 419 443 414 449 0.88

12 13 4.3 7.9e+02 -0.1 0.1 24 48 449 473 444 476 0.84

13 13 6.8 1.2e+03 -0.7 0.0 22 45 505 528 501 530 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.018	3.3	7.6	0.2	8	46	13	52	8	54	0.80
2	13	0.0049	0.9	9.4	0.3	21	45	55	79	51	83	0.91
3	13	0.37	68	3.4	0.2	21	52	83	114	79	116	0.86
4	13	0.11	20	5.1	0.0	22	46	140	164	128	170	0.86
5	13	0.093	17	5.3	0.0	22	45	196	219	192	227	0.85
6	13	4.7	8.5e+02	-0.2	0.0	21	45	223	247	218	254	0.85
7	13	0.13	24	4.8	0.0	21	52	251	282	246	284	0.77
8	13	7.8	1.4e+03	-0.9	0.1	22	45	336	359	330	366	0.84
9	13	0.35	64	3.4	0.1	21	45	363	387	360	390	0.90
10	13	3.7	6.8e+02	0.2	0.0	22	44	392	414	389	417	0.86
11	13	0.091	17	5.3	0.1	21	45	419	443	414	449	0.88
12	13	4.3	7.9e+02	-0.1	0.1	24	48	449	473	444	476	0.84
13	13	6.8	1.2e+03	-0.7	0.0	22	45	505	528	501	530	0.85

Sequence Information

Coding Sequence: ATGCGTTCCAAGTGCGCTGTCTGTTCCAAACTTTGCCATTCTGCAGGCGCACTCAAGGTTCATGTCAGGATCCACACCGGCGAGAAGCCGTACGAGTGTACCATCTGCAAAAAGAAGTTCAATCAAAGAAGTTACCTCCGAACGCATCTGCGGATCCACACCAATGAGAGGCCCTTCGAGTGCACCGTCTGCCACAAGAAGTTCCACCAGTCTACGTCCCTTCGGACGCACCTCCGCGCCCACACTGGGGAGAGGCCCTACGAGTGCACCATCTGCAAGAAGACCTTCGTTGTGGCAACGCTACTGCGGACGCACCTTCGCatccacactggggagaagccatACAAGTGCTTGGTCTGCGGTAAGAAGTTTCGTCTCAAGGGATCCCATCGTGAGCACCTGCGCACCCACACTGGAGAGAAGTCTTTTGAATGCACGATTTGCAAGGGTAAGTATGGCCAGGCAGACCATCTGAAGAGGCACCTCCgtatccacaccggggagaaggcTTTCGAATGCACGGTGTGCCTGAAGAGGTTCGGCTTGGCATGCAGCCTCCGAGCGCATCTTCGGATCCACACTGGAGAAACGCCCTTCGAGTGCACGGTCTGCAAAAGGAAGTTTGGTCGAGAAGAAAACCTCCGCAAGCACCTCCTTAcccacactggggagaagcctttccagTGCGTGGTCTGCAACCGAAAGTTTACGTGGGCTCAAAACCTCGCTATGCACGTTCGCACCCACatcggggagaagccttttgaaTGCACGGTCTGTGGGAAAAAGTTCATTTCTCAATCGGACCTACGAAAGCACCTCCAAACCCACACCGCTGaaaagcctttcgagtgcgtGGTTTGCAATACCAAGTTTACTACGAAACCTGAACGACAGAGGCACTATCTGACCCACACCGGGGACAGGCCGTACAAGTGTACGTTTTGCTCAAAGAAATTTGGCAGGGAGGATGCGTTACGGGTGCACGTCCGGATGCACACTGGAGATACTCCCTTTGTGTGCACGGTCTGTCAGAGGAAGTTCCTCTCAGCCGGGTCCCTTCGAACGCACCTCTTGATCCACACTGGGGAGAGACCTTACAAGTGCACGGTCTGCAAAAAGACGTACCTCCAAGCCGGAGACCTGCGGGCACACGTGCGCGTTCACATTGAGGAACTACCCTACGAGTGTACCGTCTGCAACAAGGGCTTCATCCGAGCCAAAGACCTCCGGGCGCATGtccgcacccacacgggagaAAGGCCTTTCGAGTGTACTGTCTGCAGCAAGACATTTGTTGAAGCCCGAGACCTTCGGTCGCACGTGTACGTCCACTTGGAAAAGTCTTTCGATTGCACGGTTTGTCAGAAAACGTATGGTCGGGCTGACCACCTCAAGAGGCACGTCCTCATCAGTCACGTCAAAGACAGGTCCTTCCGGTGCACGGAATGCCTCAAAAGCTTCAACGACGAAAGCGGACTCCGAGCGCACCTCTTCAACGCCCACGTTGACGAGAAGCCGTTTGAATGCACGGTCTGCAGTAAGAAGTTCTATTTGGAAGGGTCCCTTCGCACGCATCTGCGCATCACCGGCGAGCAGCCTTCAATGAGCAGGGGCGAAGGCGAGAGCGAGGTCAAGAAGGAGTTGGAGtcagaggagagaggagacgTTACCACGGACGTGATCGACCACATACCGCTGCTACACGAAGCAGTACGTGTGGAGCTGCCACCCAATGATTCAGTTGCTGGTTCAAAGCAACTACCTTCGGTCAAGACGGAACCTGAACCTGTCGACATCGCAGAGTTCCGAACCCCTGCGGCCGCTTCAACACCCGCAGCTGATGCTCCCTCCATTCCCATCAAGACCCTCCCTCCCGCGAGAAGCCCCACGAGTCCACTACCAGTCGCGCAGCCTCGGAAGTTATTTGCTGCACTCACCAAATCGATGGAGCAAGCTCGGCCAAGCCGACTGCGGCGACCACCCAGGCGATTCAAAGATTACATTGTTGACTAG
Protein Sequence: MRSKCAVCSKLCHSAGALKVHVRIHTGEKPYECTICKKKFNQRSYLRTHLRIHTNERPFECTVCHKKFHQSTSLRTHLRAHTGERPYECTICKKTFVVATLLRTHLRIHTGEKPYKCLVCGKKFRLKGSHREHLRTHTGEKSFECTICKGKYGQADHLKRHLRIHTGEKAFECTVCLKRFGLACSLRAHLRIHTGETPFECTVCKRKFGREENLRKHLLTHTGEKPFQCVVCNRKFTWAQNLAMHVRTHIGEKPFECTVCGKKFISQSDLRKHLQTHTAEKPFECVVCNTKFTTKPERQRHYLTHTGDRPYKCTFCSKKFGREDALRVHVRMHTGDTPFVCTVCQRKFLSAGSLRTHLLIHTGERPYKCTVCKKTYLQAGDLRAHVRVHIEELPYECTVCNKGFIRAKDLRAHVRTHTGERPFECTVCSKTFVEARDLRSHVYVHLEKSFDCTVCQKTYGRADHLKRHVLISHVKDRSFRCTECLKSFNDESGLRAHLFNAHVDEKPFECTVCSKKFYLEGSLRTHLRITGEQPSMSRGEGESEVKKELESEERGDVTTDVIDHIPLLHEAVRVELPPNDSVAGSKQLPSVKTEPEPVDIAEFRTPAAASTPAADAPSIPIKTLPPARSPTSPLPVAQPRKLFAALTKSMEQARPSRLRRPPRRFKDYIVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435220;
90% Identity: iTF_01435220;
80% Identity: iTF_01435220;