Tpal007748.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:10656012-10667439[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.062 11 5.8 0.0 23 44 68 89 65 94 0.90 2 13 1.7 3.1e+02 1.3 0.0 26 45 99 118 92 122 0.85 3 13 1.2 2.2e+02 1.7 0.1 23 46 124 147 118 153 0.84 4 13 0.0017 0.3 10.9 0.0 21 47 150 176 146 182 0.86 5 13 2 3.6e+02 1.0 0.0 21 46 178 203 174 209 0.81 6 13 0.11 21 5.0 0.1 21 45 206 230 200 233 0.90 7 13 0.048 8.7 6.2 0.1 21 46 234 259 230 265 0.86 8 13 0.043 7.9 6.4 0.1 21 47 262 288 258 294 0.85 9 13 0.89 1.6e+02 2.2 0.2 22 46 291 315 286 322 0.82 10 13 5.6 1e+03 -0.4 0.1 21 44 318 341 313 349 0.68 11 13 1.5 2.8e+02 1.4 0.1 21 44 346 369 330 376 0.84 12 13 2.8 5e+02 0.6 0.1 26 49 379 402 370 407 0.80 13 13 7.3 1.3e+03 -0.8 0.0 21 44 402 425 398 428 0.87
Sequence Information
- Coding Sequence
- ATGGAGTCAACAGTCACTCGCGGAGAAGTTTGCACTCCGAGCGCAGATTGGCGTAAGGTGAGGGCCTCTCCGTCAAACTACACTGCGCGCCTTAGGACTCGTACTGGGGACAAGTCTCCTAaatgcgccgccgccgcctgcaacaAAAAGTTGACTGCTGAAGGATATCTTCAAATGCACCTCTGCACTCACGCTGGGGTGAATCCTCACAAGTGTGCTGTTTGCAATAAAAAGTTCGCTCAAGAAGGAAACCTTCGGAGTCACCTCCTTACTCACAGCGGGGAGGGCAGTTTTGAGTGCATGGTTTGCAACAAAAAGTTCACTCGCGGTGGGAATCTTCGATCGCACCTCCGCTTCCACACAGGCCAGATGCCTTTTGAATGCGTGCTCTGCAATAAGAAGTTTGCTCAGCAAACACACCTTCGAGGGCACCTCCGCACTCACACTGGCGAGAAGCCCTTTGAGTGTACTATCTGCAATAAGAAGTTTGCTCAGCAAACAAACCTTCGAGGGCACCTCCGCACtcacactggggagaagccctTCGAGTGTGATGTCTGCAATAAGAAGTTTGCTCTGCAAGACAAACTTAGGGTGCACCTCCGGACTCATACTGGGGAGAAGCCCTTCGAGTGTGCTGTCTGCAATAAGAAGTTTGCTCAGCAAGCACACCTGCGAGGGCACCTCCGCACtcacactggggagaagccctTCGAGTGTGCTGTCTGCAATAAGAAGTTTGCTCAGCAAGCACACCTTCGTACGCACCTCCGCACtcacactggggagaagccctTCGAGTGTGCTGTCTGCAATAAGAAGTTTGCTCAGCAAACACACCTTCGAATGCACCTCCGCACTCACACTGGGCAGAAGCCCTTCGAGTGTGCTGTCTGCAATATGAAGTATGCTCAGCAAACACACCTTCGAGGGCACATCCGCACtcacactggggagaagccctTCGAGTGTGCTGTCTGCAATAAGAAGTTTGCTTCGCAAGCAAACCGTTCGGCGCATCTTCGTGCTCACACTGGGGAAAAGCCCTTTGAGTGTGCTGTCTGCAATGAGAAGTTCGCTCGTGAGGGACGCCTTCGACAGCACTTCCGTACTCACACTGGTGAGAAGCTCTTCGAGTGTGCTGTCTGCACTAAGAGGTTCCCTCAAGAAAGAGGCCTTCTGACACACCTACGTACTCACACTGCCGAAAAGCCCCTTAAGTGTGATGTCTACCATAAGAAGTTCTCTCAAGAAGGAAACCTTCTCATGCATCTGCGCTCTCATACCAGGGAAGACCTTTGA
- Protein Sequence
- MESTVTRGEVCTPSADWRKVRASPSNYTARLRTRTGDKSPKCAAAACNKKLTAEGYLQMHLCTHAGVNPHKCAVCNKKFAQEGNLRSHLLTHSGEGSFECMVCNKKFTRGGNLRSHLRFHTGQMPFECVLCNKKFAQQTHLRGHLRTHTGEKPFECTICNKKFAQQTNLRGHLRTHTGEKPFECDVCNKKFALQDKLRVHLRTHTGEKPFECAVCNKKFAQQAHLRGHLRTHTGEKPFECAVCNKKFAQQAHLRTHLRTHTGEKPFECAVCNKKFAQQTHLRMHLRTHTGQKPFECAVCNMKYAQQTHLRGHIRTHTGEKPFECAVCNKKFASQANRSAHLRAHTGEKPFECAVCNEKFAREGRLRQHFRTHTGEKLFECAVCTKRFPQERGLLTHLRTHTAEKPLKCDVYHKKFSQEGNLLMHLRSHTREDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435238;
- 90% Identity
- iTF_01435238;
- 80% Identity
- iTF_01435238;