Tpal001494.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:4151917-4166148[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.6 4.7e+02 0.7 0.0 24 52 100 128 94 129 0.80 2 10 0.03 5.5 6.9 0.0 22 47 126 151 117 156 0.84 3 10 0.17 31 4.4 0.0 21 44 153 176 149 180 0.88 4 10 1.5 2.7e+02 1.4 0.1 21 45 181 205 177 213 0.72 5 10 7.1 1.3e+03 -0.7 0.0 21 43 238 260 220 263 0.82 6 10 0.022 3.9 7.3 0.1 22 45 267 290 258 293 0.88 7 10 0.37 67 3.4 0.0 21 45 294 318 290 325 0.90 8 10 7.1 1.3e+03 -0.7 0.1 21 42 350 371 341 377 0.73 9 10 0.022 4 7.3 0.1 20 48 377 405 369 407 0.85 10 10 0.0095 1.7 8.5 0.2 16 48 402 434 402 437 0.90
Sequence Information
- Coding Sequence
- ATGCGCAAGATGGTTGTGCATAGCCGCATTGATGCCGACAAGAACCCTCTCCAGTGCAAATTTTGTCATAAGAAGTTCCAGAACGGTAAAACACTTTCAGCTCATTACCAGATCCATACAAAAGAGGAACTGCACGAATGCGTCGTTTGCTCTAAGAAGTTGAGTCGTAAAGATTCTCTCAAGATTCATCTAAGAACCCataccggggagaagcctttcgaatgcacagtttgcaagaaGAGGTTTTCTTCATCCAGTGGTTTCTTGACTCATGCAAAAACCCACACAGGGGAGAAGCGTTACGAGTGCATGATTTGCAGCAAGAAGTGGAGTGCATTAAGGGACCTCAAGACCCATCTTAGAATCCATTCTGGGGacaagcctttcgagtgcaacgtttgcaacaagaagtttaaTCAAGGAAGTAATCTGAAGACCCATCTTAAAACCCACTCGGAAGAGAAACCTTTCGAATGCACAATTTGCAGTAAGAAGTTTAGGTTTAGAAGTAACCTCATAGACCATCTTGTAACTCATAAAGAGGAGCGACCTTTCAAGTGCACAGTTTGCTCTATGAAATTTAGCCTAAGACAAAGCCTCAAAACTCATTTGCAAACGCATCTAAAAGGGCCCAAACCTtacgagtgcacagtttgcagtAAGAAGTTTACTGCAGTGGGTGGCCTCAAAACTCACCTTTCAGTTCACACTGGTGACAAGCCATTCGAGTGCGCTGTTTGCAATAAGAAGTTCAGGACAGGGTGTGAACTCAAAATTCATCAGAGAAATCACACGGGGGACAAGCCTTTTGAGTGCAGTGTTTGCAACAAGCAGTTCAAGCAATCGGCCCATCTCAGAAGTCACGTTAAAACGCACACGGAGGAGAGGCCGtttgagtgcacagtttgcaaaaAGCAGTTTAAGCAGAAGGATATTCTTAAGTCTCACCTTCAAACTCATACCGGCGAAAAGAAATTTGAGTGCGTAGTTTGCAATAAAAAGTTTAGCCGATCTTTCGTCCTCAAAACTCACTTTAGAACCcacacaggggagaagcctttccagTGCGCGGTCTGCAATCACAAGTTTGCTGATCGAAGTGACCTAACCAAGCATTCCAGAGTTcacacaggggagaagcctttcgagtgcacggTTTGCGGGAAGAAGTACAGTGAAGCACGTGCTCTCCGAACTCATCTTAGAAGCAGCcatacaggggagaagccttttgagtgcacAGTATGTGATGAGAAGTTTACTTCAGCAGATCACCTGAGGCGTCATCTAAGAAGAACGCATACAGAGGAGGAGCCTCTCTAG
- Protein Sequence
- MRKMVVHSRIDADKNPLQCKFCHKKFQNGKTLSAHYQIHTKEELHECVVCSKKLSRKDSLKIHLRTHTGEKPFECTVCKKRFSSSSGFLTHAKTHTGEKRYECMICSKKWSALRDLKTHLRIHSGDKPFECNVCNKKFNQGSNLKTHLKTHSEEKPFECTICSKKFRFRSNLIDHLVTHKEERPFKCTVCSMKFSLRQSLKTHLQTHLKGPKPYECTVCSKKFTAVGGLKTHLSVHTGDKPFECAVCNKKFRTGCELKIHQRNHTGDKPFECSVCNKQFKQSAHLRSHVKTHTEERPFECTVCKKQFKQKDILKSHLQTHTGEKKFECVVCNKKFSRSFVLKTHFRTHTGEKPFQCAVCNHKFADRSDLTKHSRVHTGEKPFECTVCGKKYSEARALRTHLRSSHTGEKPFECTVCDEKFTSADHLRRHLRRTHTEEEPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435239;
- 90% Identity
- iTF_01435239;
- 80% Identity
- iTF_01435239;