Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4218340-4225518[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0027 0.49 10.2 0.2 21 46 45 70 40 76 0.86

2 15 1.6 2.9e+02 1.3 0.0 21 45 73 97 67 100 0.85

3 15 0.0011 0.2 11.5 0.0 21 46 101 126 97 132 0.87

4 15 0.25 45 3.9 0.1 21 46 129 154 125 160 0.86

5 15 0.18 34 4.3 0.0 21 47 157 183 153 189 0.85

6 15 0.89 1.6e+02 2.2 0.1 21 51 185 215 177 217 0.81

7 15 0.73 1.3e+02 2.4 0.0 21 48 213 240 209 244 0.86

8 15 1.5 2.8e+02 1.4 0.2 21 46 241 266 233 273 0.83

9 15 6.3 1.2e+03 -0.6 0.0 21 48 269 296 263 302 0.76

10 15 4.1 7.6e+02 0.0 0.0 20 43 297 320 289 324 0.81

11 15 0.29 53 3.7 0.0 20 45 325 350 308 357 0.81

12 15 0.48 87 3.0 0.0 21 48 354 381 349 386 0.82

13 15 1.3 2.3e+02 1.6 0.0 21 45 382 406 380 414 0.81

14 15 0.53 96 2.9 0.1 18 45 435 462 430 468 0.85

15 15 0.19 35 4.3 0.1 21 45 494 518 484 521 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0027	0.49	10.2	0.2	21	46	45	70	40	76	0.86
2	15	1.6	2.9e+02	1.3	0.0	21	45	73	97	67	100	0.85
3	15	0.0011	0.2	11.5	0.0	21	46	101	126	97	132	0.87
4	15	0.25	45	3.9	0.1	21	46	129	154	125	160	0.86
5	15	0.18	34	4.3	0.0	21	47	157	183	153	189	0.85
6	15	0.89	1.6e+02	2.2	0.1	21	51	185	215	177	217	0.81
7	15	0.73	1.3e+02	2.4	0.0	21	48	213	240	209	244	0.86
8	15	1.5	2.8e+02	1.4	0.2	21	46	241	266	233	273	0.83
9	15	6.3	1.2e+03	-0.6	0.0	21	48	269	296	263	302	0.76
10	15	4.1	7.6e+02	0.0	0.0	20	43	297	320	289	324	0.81
11	15	0.29	53	3.7	0.0	20	45	325	350	308	357	0.81
12	15	0.48	87	3.0	0.0	21	48	354	381	349	386	0.82
13	15	1.3	2.3e+02	1.6	0.0	21	45	382	406	380	414	0.81
14	15	0.53	96	2.9	0.1	18	45	435	462	430	468	0.85
15	15	0.19	35	4.3	0.1	21	45	494	518	484	521	0.87

Sequence Information

Coding Sequence: ATGTTCAGAAAAAGAAGTGACCTGGACCCTCATCTTAGAACCCATACCGGGGAGAATCATTTTGAGTGCACGGTTTGCAATAAGAAGTTTACTAGTAAACAGTACCTCGGAATCCATCAAAGAATCcatacaggggagaagccAGTCAAGTGCCCAGTTTGCAATAGGAACTTCCGTCAACGAGGTCATCTCACGACGCATCTTAGAACCCATACAGGGGaaaagcctttcgagtgcacagtatGTAAAAAGAAGTTTAATGACCGACGAGATCTCAGTTCCCACTTTAGAATCCATACAggagagaagcctttcgagtgctcACTTTGTTTTAAGAAGTTTAATCAACAAAGTAATCTCAGAACTCATCTAAGAACAcacacaggggagaagcctttccagTGTACTGTTTGCAGTAAGAAGTATGCCGAATCAGGTGCACTTCGAGTTCATCTTAGAACCCATACAGGAGAGAAACCTTATAAGTGCACACTTTGCAACAAAATGTACAGGTCAGGAAATAGCTTGAAATTTCATCTTAGAACCCACTCGaaggagaagcctttcgagtgcaatgtttgcaacaagaagctCTGTTCAGGGCAAAGTCTTCAAATCCATCTTCGAATGCATACAggagagaagccttttgagtgcctagtttgcaacaagaagtttagTTATGCGGAAAGTCTTCGAAGTCATGTTGAAACCCataccggggagaagccttatgagtgcacagtttgcaatcAGAACTTCAGTACCCGAAGTGTTCTCAGGGCTCATCTGAGAACCCACACGGgcgagaagcctttcgagtgcacagtttgcaacaagaagttcagccGCAGAGACGGTCTCAAAGGTCATGTTAGAAGAACCCACATGGgcgagaagcctttcgagtgctcAGTCTGCAAGAAGACATTTGGCGAAGCAGGCAAACTCAAAAAGCATCAAAGAACCCACACAGGAGAAAAGCCATTCCAGTGCACAGTTTGCGATAGAACGTTTTCGGAAGCAGGAAGTCTTAGAATTCATCTTCGAACCCATACAGCGGAGAGGCCTTTTGAGTGCACAATTTGCAATAAGAATTTCAAAAGCAAAAATCCTCTTGTAAAGCATCTGGGAGTCcatacaggggagaagccCTTCAAATGCTCAGTTTGTCAGAAGATGTTTCGATTAAAAAGTTACATGAACGCTCACCTTAGAACCcacacaggggagaagcctttcgagtgcgaAGTTTGCAACGAGAAGTTTTGTAGTAAACAGGCGGTCACTCTCCATCTTAGAAGGCATACAGGAGAGACGCCTTTCCAGTGCACAATTTGCAGTAAGAAGTTCAGCCGAAGAGGTTACCTCCGAACTCATCTCGTAGTCCATACAGGAGAGAAGGCGTTCGAGTGCAgtgtttgcaacaagaagtatGGTCTCAAGCAAACTCTCAAACTGCATCTTCGAACCcacacaggggagaagccttacgTGTGCACAGTTTGCAGGAAGAGGTTTATTCGATCAGGCTATCTAAGAACGCATCTCCAAACCCATTTAACCTGA
Protein Sequence: MFRKRSDLDPHLRTHTGENHFECTVCNKKFTSKQYLGIHQRIHTGEKPVKCPVCNRNFRQRGHLTTHLRTHTGEKPFECTVCKKKFNDRRDLSSHFRIHTGEKPFECSLCFKKFNQQSNLRTHLRTHTGEKPFQCTVCSKKYAESGALRVHLRTHTGEKPYKCTLCNKMYRSGNSLKFHLRTHSKEKPFECNVCNKKLCSGQSLQIHLRMHTGEKPFECLVCNKKFSYAESLRSHVETHTGEKPYECTVCNQNFSTRSVLRAHLRTHTGEKPFECTVCNKKFSRRDGLKGHVRRTHMGEKPFECSVCKKTFGEAGKLKKHQRTHTGEKPFQCTVCDRTFSEAGSLRIHLRTHTAERPFECTICNKNFKSKNPLVKHLGVHTGEKPFKCSVCQKMFRLKSYMNAHLRTHTGEKPFECEVCNEKFCSKQAVTLHLRRHTGETPFQCTICSKKFSRRGYLRTHLVVHTGEKAFECSVCNKKYGLKQTLKLHLRTHTGEKPYVCTVCRKRFIRSGYLRTHLQTHLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435213;
90% Identity: iTF_01435213;
80% Identity: iTF_01435213;