Tpal013060.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:6030082-6031245[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.52 96 2.9 0.0 21 47 70 96 63 103 0.82 2 9 0.018 3.4 7.5 0.2 22 45 157 180 152 183 0.90 3 9 0.0098 1.8 8.4 0.3 21 46 184 209 180 215 0.86 4 9 0.23 42 4.0 0.1 21 45 212 236 208 244 0.85 5 9 2.1 3.8e+02 1.0 0.2 23 45 242 264 236 268 0.88 6 9 0.14 26 4.7 0.1 24 47 271 294 264 300 0.84 7 9 1.8 3.3e+02 1.2 0.1 22 52 297 327 292 327 0.85 8 9 0.059 11 5.9 0.0 23 46 326 349 320 352 0.88 9 9 0.0021 0.38 10.6 0.3 22 45 353 376 348 381 0.90
Sequence Information
- Coding Sequence
- ATGTTGCAAGGAGTCACAAGACTTGTGTTGGTGTTTCAGGTTGCTACTCGAACAAGGACACCAATGGCTCGGGATTCCCCGGCTTGTCCCTCGCCGTCTGAACTGGACGTGCCCTTCCGCCTCCACTCGTCGGGGCTGCCGGTTGGGGAGCGCGGTTCTTGTAAGGATGCAAGCAGTGTTCTTGGAAGTGAAGGAAGCTTCAACACTACGGAGAAGAATTTCAAATGCACAGTTTGCCTGAAAAGGTTTCAGACTGAATTACAGCTTAGAGCTCACCTGGAAGCGCATCTCGTGAGCTGGAATGGAGTCAAGATGTCAGAAtgcaaaatttgttttaaaaagTTTTCTTACTCCTATATTAAGACGCATCTTATGACACACTCAGGCGAGCTCTATGAATGTGTAGTTTGCGCTGCTCAGTTCAATCTCTACTGCGACCTGAGAATTCATGTTCGCATCCATACGAGGGAAAAGCCGTTCGACTGCCCAGTTTGCAGTTACAAGTTTAGGACGGCATACCAGATGCGAGTTCATCTAAGAACCCATACAGGAGAAAAGCCCTTCCAGTGCGAAGTTTGCCCGAAGAAGTTTAGACAGCCAAGCCATCTTAGAACTCATCTGCGAACCCACACAGGGGAAAAGCCCTAtaagtgcacagtttgcaacaaATCCTACAGTGAGTCAGGAAATTTTAGGGTTCATCAACGAACGCATACAGGTGTGAAGCCGTACGAGTGCAAAGTTTGCAGTAAGAAGTTTAATCAGCCAAGCCATCTTCGGTATCATGTCCGAATTCATTCAGGAGGCCTGCCTTTTGAGTGCACATTTTGCAAAAGAAAGTTTAGACAGGATGGCACTCTCCGAAGTCACCTCAGAACCCATACGGGCAAGAAGCCTTATTCTTGCATTGTTTGCAAAAAAGAATTCACCACCGGTTCTGGTCTAAGGAGCCACCTTCGAGTCCATACAGATAGCAAGCCGTTCAAGTGCAAAGTTTGTGACAAAGACTTTCGCCATTCTTTTTCTCTAAGAACTCATCTTAGAGTTCATACGAAGGAGATGCCTTATGAGTGCCAAGTTTGCAAAATGAAGTTTCGTTACTCTTCTAATATCAGGAAACACCTTCGGACCCATTCTGCAGGAAGAGATTTGGCTTCAGTCTGA
- Protein Sequence
- MLQGVTRLVLVFQVATRTRTPMARDSPACPSPSELDVPFRLHSSGLPVGERGSCKDASSVLGSEGSFNTTEKNFKCTVCLKRFQTELQLRAHLEAHLVSWNGVKMSECKICFKKFSYSYIKTHLMTHSGELYECVVCAAQFNLYCDLRIHVRIHTREKPFDCPVCSYKFRTAYQMRVHLRTHTGEKPFQCEVCPKKFRQPSHLRTHLRTHTGEKPYKCTVCNKSYSESGNFRVHQRTHTGVKPYECKVCSKKFNQPSHLRYHVRIHSGGLPFECTFCKRKFRQDGTLRSHLRTHTGKKPYSCIVCKKEFTTGSGLRSHLRVHTDSKPFKCKVCDKDFRHSFSLRTHLRVHTKEMPYECQVCKMKFRYSSNIRKHLRTHSAGRDLASV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435284;
- 90% Identity
- iTF_01435284;
- 80% Identity
- iTF_01435284;