Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4273074-4277021[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.2 9.4e+02 -0.3 0.3 27 48 120 141 115 145 0.83

2 15 0.087 16 5.4 0.0 21 46 142 167 138 173 0.84

3 15 0.76 1.4e+02 2.4 0.1 21 45 170 194 166 202 0.84

4 15 0.01 1.9 8.4 0.1 22 46 199 223 188 229 0.85

5 15 0.5 92 2.9 0.1 21 46 226 251 222 257 0.86

6 15 0.0032 0.58 10.0 0.1 21 47 254 280 249 286 0.86

7 15 1.1 2e+02 1.9 0.1 21 46 282 307 278 313 0.84

8 15 0.98 1.8e+02 2.0 0.0 21 46 310 335 306 342 0.84

9 15 0.64 1.2e+02 2.6 0.0 21 46 338 363 334 370 0.85

10 15 0.98 1.8e+02 2.0 0.0 21 46 366 391 353 397 0.82

11 15 7.4e-05 0.013 15.2 0.2 20 45 393 418 377 421 0.82

12 15 0.046 8.4 6.3 0.8 21 45 422 446 418 449 0.91

13 15 0.12 22 4.9 0.0 21 47 450 476 446 482 0.85

14 15 0.51 93 2.9 0.1 21 45 478 502 474 509 0.89

15 15 4.3 7.9e+02 -0.0 0.0 21 45 506 530 502 533 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.2	9.4e+02	-0.3	0.3	27	48	120	141	115	145	0.83
2	15	0.087	16	5.4	0.0	21	46	142	167	138	173	0.84
3	15	0.76	1.4e+02	2.4	0.1	21	45	170	194	166	202	0.84
4	15	0.01	1.9	8.4	0.1	22	46	199	223	188	229	0.85
5	15	0.5	92	2.9	0.1	21	46	226	251	222	257	0.86
6	15	0.0032	0.58	10.0	0.1	21	47	254	280	249	286	0.86
7	15	1.1	2e+02	1.9	0.1	21	46	282	307	278	313	0.84
8	15	0.98	1.8e+02	2.0	0.0	21	46	310	335	306	342	0.84
9	15	0.64	1.2e+02	2.6	0.0	21	46	338	363	334	370	0.85
10	15	0.98	1.8e+02	2.0	0.0	21	46	366	391	353	397	0.82
11	15	7.4e-05	0.013	15.2	0.2	20	45	393	418	377	421	0.82
12	15	0.046	8.4	6.3	0.8	21	45	422	446	418	449	0.91
13	15	0.12	22	4.9	0.0	21	47	450	476	446	482	0.85
14	15	0.51	93	2.9	0.1	21	45	478	502	474	509	0.89
15	15	4.3	7.9e+02	-0.0	0.0	21	45	506	530	502	533	0.84

Sequence Information

Coding Sequence: ATGCGCTACTGTCAACCCGGCTTTGCTTCGCATGCAACTGCGTGGGTGCGCAGATCCCAGCGTGGTGAGCAAGAGCACCAACCAGCGCAGGAGCGTCAAGGAACGAACCAACAGCGGGCACGAGACTCTACAGGAGGACCGGATCCATCGAGGAGGGAACACTCGGACGACGCACCCATCGGAAGCTGCCAATCTTCAACTACAAACTTCTCAGCGAGTGACTTCCAACGCGCGAGACACGAAATCAACATCATGGTGGAGAATTCTTCGGAGTACTACGACAGCAACAAGAAGACCACTACAAAATCGACCGTGTCAAGTGATCGTCGAGTTCATCATATGGATAGGCtattcgagtgcacagtttgcaaaaGGAAGTTCACTCAACGATATCACCTAAATAGACACATCAGAATTCATACAGGGGAGAAACCTTTCGAGTGCCCAGTTTGCAATAAAAAGTTCAGTAGGTCTGAAGGTCTCCAAACTCATATTACTACCCACAAAGAggagaagccttttgagtgctcagtatgcaacaagaagtttagTTGTACACAAGGTCTCCGAAAACATTGCAACACCCATTTAGAGAAGAAGCCTtacgagtgcacagtttgcaacaagacGTTCAGTCAAGCTTTTAATCTTCGAACTCATCTGACAACTCATACAGGGGAGAAACCTTTccagtgcacagtttgcaaagAGGCTTACAGTCACGCTGGTCATCTTCGATCTCATCTAAGAACCcatacaggggagaagccttacgAGTGCATAGTTTGCAACAAGACGTTCAATCAAGGTAGTAACCTTCGATCTCATCTGAGAACCcacacaggggagaagccttacgAGTGCGCAGTTTGCAACAAGACGTACAGTCATGCTGGTTATCTTCGAATTCATCTTAGAACTCATACAGGAGAGAAGCCATTCGAGTGCACCGTTTGCAAGAAAAGGTTCAATGAAACTGGTACGCTCCGAATTCATCTTAGAACTcatacaggggagaagccATTCGAATGTACCGTTTGCAATAAAAGGTTCAATAAAACTGGTACGCTCCGAATTCATCTTAGAACTCATACAGGAGAGAAGCCATTCGAGTGTACCGTTTGCAATAAAAGGTTCAGTGGAACTGGTACACTCCGAACTCATCTTAGAACCCACACGGGAGAGAAGCCTtacgagtgcacagtttgcaacaagacGTTCAGACAAGCTCGTGATCTCCGAATTCATCTTAGAACCCATACGGGAGAGAGGCCTTACGAGTGTAGAGTTTGCAACAAGACGTTCCATCAAGCTCATGAACTCCGAATTCATCTTAGAACCCACACAGGAGAGAGGCCTTTCGAGTGTATGGTTTGCAATAAGAAGTTTGGTCGAAGAGACAATCTTAGAACTCATCTTAAAACCCATACAGGAGAGAAGCCTTACGAGTGTacagtttgcaacaagacGTTCAGTCGAGCTGGTAAACTCCGAATTCATCTCAGAACCCACACGGGAGAGAGGCCTTTCGAGTGTACAGTGTGCAAAAAGAAGTTTAGTCGAGGAGACAAACTTAAAACTCATCTGAAAACCCACACATCTGAGACAAAAGAATTGTAA
Protein Sequence: MRYCQPGFASHATAWVRRSQRGEQEHQPAQERQGTNQQRARDSTGGPDPSRREHSDDAPIGSCQSSTTNFSASDFQRARHEINIMVENSSEYYDSNKKTTTKSTVSSDRRVHHMDRLFECTVCKRKFTQRYHLNRHIRIHTGEKPFECPVCNKKFSRSEGLQTHITTHKEEKPFECSVCNKKFSCTQGLRKHCNTHLEKKPYECTVCNKTFSQAFNLRTHLTTHTGEKPFQCTVCKEAYSHAGHLRSHLRTHTGEKPYECIVCNKTFNQGSNLRSHLRTHTGEKPYECAVCNKTYSHAGYLRIHLRTHTGEKPFECTVCKKRFNETGTLRIHLRTHTGEKPFECTVCNKRFNKTGTLRIHLRTHTGEKPFECTVCNKRFSGTGTLRTHLRTHTGEKPYECTVCNKTFRQARDLRIHLRTHTGERPYECRVCNKTFHQAHELRIHLRTHTGERPFECMVCNKKFGRRDNLRTHLKTHTGEKPYECTVCNKTFSRAGKLRIHLRTHTGERPFECTVCKKKFSRGDKLKTHLKTHTSETKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435221;
90% Identity: iTF_01435221;
80% Identity: iTF_01435221;