Tpal009608.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1975140-1980533[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 4.8e+02 0.6 0.0 22 46 85 109 81 113 0.83 2 13 0.0032 0.58 10.0 0.2 21 47 141 167 133 174 0.87 3 13 1.5 2.7e+02 1.5 0.0 23 51 173 201 165 203 0.83 4 13 0.98 1.8e+02 2.0 0.0 21 46 199 224 195 230 0.85 5 13 1.7 3.1e+02 1.3 0.1 21 45 227 251 222 254 0.89 6 13 0.68 1.2e+02 2.5 0.0 21 47 255 281 250 286 0.85 7 13 0.88 1.6e+02 2.2 0.0 22 44 284 306 282 310 0.88 8 13 0.037 6.7 6.6 0.1 21 44 311 334 307 338 0.90 9 13 0.084 15 5.4 0.1 21 46 339 364 335 367 0.91 10 13 0.094 17 5.3 0.0 22 46 368 392 365 399 0.86 11 13 0.55 1e+02 2.8 0.1 21 45 423 447 419 454 0.88 12 13 0.6 1.1e+02 2.7 0.1 21 47 451 476 447 481 0.80 13 13 0.0069 1.3 8.9 0.2 21 45 480 504 476 508 0.89
Sequence Information
- Coding Sequence
- ATGAGCTCGATGGCCCTCAAATGCTCTCTTTGTGGCGAAGTGTTCTCTTGCCAGTCCAAGCTGACTGCGCACACACGCATTCACACAAAGCCATATGAGTGCAATGTTTGCAAGAAGACTTTTACTCATGAATCTCGCCTTCAAACCCATCTTCAAACCCATACCAGAGAGAAGCGCGTCGAGTGTACAGTTTGCAATCGGAACTTCAGTAGCTCCATTCAACATCGTGCTCATCTTATGATTCATACCGGGGAGAAACCTTTTGAACCCATAATTTGCAATGAGAAGTTCACTCAATCAAGTGGTCTCAAGACACACCTTAAAGGAGTCCATTCACAGGAAGGGCCTCTCAAGTGTTCAGTTTGCGACAAGAAATTTACTAATTTTAGGCTTTTTAAAACTCATTTTCGAATTCATGCCGGGGAGCAGCCTTTTGAGTGCACTGTCTGCAATAAGAAGTTTACTCAGATCGATCATCTGAGACGTCATATTCGAACCCATACAGAGGAGAAGCCCAAGCCtctcgagtgcacagtttgtgATGTAAAGTTCATTTCTTCAGACCAACTTAAAAGTCATCTTAGAATTcatacaggggagaagccATTTGAGTGCCATGTCTGCGATAAGAAGTTTACTCGGGGTGGTGATTTGAGATCTCATCTTCGAACCcatacaggggagaagccATTTGAGTGCCTTGTCTGCAATAAGAAGTTTTCTCACGGCCATCAACTGAGATGTCATCTTCGAACCCATACAGGGGAGAGGCCTTACGAGTGCTCAGTTTGCAATAGGAAGTTTAGTGGCCTATCCAACCTTAAAGACCATCTTAAAATCCATTtaggggagaagcctttcgagtgcacagtttgtaATGCGAAGTTCATTTCTTCAGACCGACTTAAAAGTCATTTTCGAGCCCATACAGGGGAGATGCCATTTGAGTGCGATGTCTGCAATAAGAAGTTTACTCATAGCCATCATCTGAGACGTCATATTCGAACCCATACAGGAGAGAGGCCTTACGAGTGCTCAGTTTGTAACAGGAAGTTCAGATTCATAAGCAACCTTAAAGACCATCTTAAAATCCATTTAGGGGAGaggcctttcgagtgcacagtttgtaATGCGAAGTTTATTTCTTCAGACCAACTTAAAAATCATCTTCGAGCGcatacaggggagaagccATTTGAGTGCCTTGTCTGCAATAAGAAGTTTTCTCATAGAAGTAGTCTGAATTCTCATCTTCGAACCCATACAGGAGAGAGGCCTTACGAGTGCTCAGTTTGCAATAGGAAGTTTAGTGGCATATCCAACCTTAAAAAACATCTTACAACCCATTCAGGAGAGAGGCCTTATAAGTGCACAATTTGCAATGAAGAGTTTGGTCATGATGCTTCTCTTAGAAAACATAATCTGAGAGCCCACGCCTCGAAAAAGCCTTACAGATGTACCGTTTGCAATATGAATTTTACTCAGTCAAAAAATCTTCTAGCCCATTTAAGAGCCCATATTGAGGAGGACATTGCTTGA
- Protein Sequence
- MSSMALKCSLCGEVFSCQSKLTAHTRIHTKPYECNVCKKTFTHESRLQTHLQTHTREKRVECTVCNRNFSSSIQHRAHLMIHTGEKPFEPIICNEKFTQSSGLKTHLKGVHSQEGPLKCSVCDKKFTNFRLFKTHFRIHAGEQPFECTVCNKKFTQIDHLRRHIRTHTEEKPKPLECTVCDVKFISSDQLKSHLRIHTGEKPFECHVCDKKFTRGGDLRSHLRTHTGEKPFECLVCNKKFSHGHQLRCHLRTHTGERPYECSVCNRKFSGLSNLKDHLKIHLGEKPFECTVCNAKFISSDRLKSHFRAHTGEMPFECDVCNKKFTHSHHLRRHIRTHTGERPYECSVCNRKFRFISNLKDHLKIHLGERPFECTVCNAKFISSDQLKNHLRAHTGEKPFECLVCNKKFSHRSSLNSHLRTHTGERPYECSVCNRKFSGISNLKKHLTTHSGERPYKCTICNEEFGHDASLRKHNLRAHASKKPYRCTVCNMNFTQSKNLLAHLRAHIEEDIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435184;
- 90% Identity
- iTF_01435184;
- 80% Identity
- iTF_01435184;