Tpal009629.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1366191-1396681[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.084 15 5.4 0.0 21 45 170 194 164 197 0.91 2 6 1.6 2.8e+02 1.4 0.1 21 44 226 249 215 253 0.82 3 6 0.0023 0.41 10.5 0.0 21 46 254 279 248 285 0.86 4 6 0.28 52 3.7 0.1 21 46 282 307 279 312 0.89 5 6 0.046 8.5 6.3 0.0 22 46 311 335 308 341 0.83 6 6 0.0026 0.47 10.3 0.2 21 45 338 362 334 367 0.91
Sequence Information
- Coding Sequence
- ATGCAGGAACGGATCCAGAGACAGCATTGGTGGATCGTCGTCTGGGCGGGCACTCTGCTGCTGGTCTACAATCACGTTCAGAGCAGATACATCCAATCGTTTGCTggCCCGTACATTATATTTCTGCGCTCGGTCACATCGTGTCCCGCGAACGGCTCGGTAGACTTCCACTTGCGTGTGACGCATTTCAAGCCCGCAAGACCTTTCGACCTGCAGATCGTTACAGTTAATTTGTCACTGGGAATTGACGTTGCAGACAATTTTTGGGTGTTGTCCCCGGGACTTGCGGAACGTGCTCGACGGAAGCCTGACGGTCATACTTTACGTGTGCACGCTCATCCAAGCGCTACCCAGCCGAGCAGCCTTATCTCTCAGCGACGACTCCGAGCGAACTGCACAACGCCGGCCACAATTTCGGAGGTCCCGAAAATGGCTCACCGATGCGCCGTGTGCGCCAAGGAGTTCCGTTATAGGTCAGTGCTGACTGCGCATCTCCGCtgccacaccggggagaagcctttcgaatGTTGGGTCTGCGACAAGAAGTTAAGTCAAGCTGGACACTTAAGAACGCACCTCCGCACCCACACTGGTGACAACCGTTTCGAATGTGCTgtctgcaacaagaagtttcTTCATGGTGGAAACCTGAAATCGCACCTCCGCGCCCACACGGGTGAGAAGCCATTCGAGTGTTCGGTCTGCAATAAGAAATTCAGTCATACTGGGCTCCTTAGATGTCACCTCCGAACTCACACCggagagaagcctttcgaaTGTTCGGTCTGCGACAAGAAGTTTAGTCAATCTGCACACCTAAGAAAGCACCTCACTACCCACACCGGAGAGAAGCCATTCGAATGTTCGgtctgcaacaagaagttcagtcGAACTGGGGACCTTAGATGTCACCTCCGCATCCACACCGGAGAGAAGTCTTTCGAATGTTCGGTCTGCGACAAGAAGTTTAGTCAATCTGCATACCTAAGGAAGCACCTCCGCACGCACACCGGCGAGAAGCCATTCGAATGTTCGgtctgcaacaagaagttcagtcAAGCAGCTCACCTTAGACGTCACCTTCGTACCCATAGAGGCGAGAAGCTATTTGAGGAAGTTAAATCGAACTTCACAGCTTAA
- Protein Sequence
- MQERIQRQHWWIVVWAGTLLLVYNHVQSRYIQSFAGPYIIFLRSVTSCPANGSVDFHLRVTHFKPARPFDLQIVTVNLSLGIDVADNFWVLSPGLAERARRKPDGHTLRVHAHPSATQPSSLISQRRLRANCTTPATISEVPKMAHRCAVCAKEFRYRSVLTAHLRCHTGEKPFECWVCDKKLSQAGHLRTHLRTHTGDNRFECAVCNKKFLHGGNLKSHLRAHTGEKPFECSVCNKKFSHTGLLRCHLRTHTGEKPFECSVCDKKFSQSAHLRKHLTTHTGEKPFECSVCNKKFSRTGDLRCHLRIHTGEKSFECSVCDKKFSQSAYLRKHLRTHTGEKPFECSVCNKKFSQAAHLRRHLRTHRGEKLFEEVKSNFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435373;
- 90% Identity
- iTF_01435373;
- 80% Identity
- iTF_01435373;