Tpal003052.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:8350550-8358518[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 18 5.2 0.0 21 46 45 70 38 73 0.87 2 10 0.029 5.2 6.9 0.0 22 47 74 99 71 104 0.86 3 10 0.017 3 7.7 0.0 21 46 101 126 97 132 0.86 4 10 0.0097 1.8 8.4 0.0 21 45 129 153 125 162 0.87 5 10 0.35 64 3.5 0.2 24 45 164 185 153 193 0.77 6 10 3.3 6e+02 0.3 0.1 22 49 191 218 185 221 0.77 7 10 0.15 28 4.6 0.0 21 44 218 241 213 250 0.86 8 10 0.0031 0.56 10.0 0.1 21 52 276 307 271 307 0.87 9 10 0.14 26 4.7 0.2 21 44 304 327 300 336 0.82 10 10 7.7 1.4e+03 -0.8 0.0 26 46 367 387 360 391 0.85
Sequence Information
- Coding Sequence
- ATGAAGCTCTGTCCGGACGAACCGAAGAAGTGCCTCAGTAGCCATAGTGGGAGAAAGGAATTTCAGTGCCTGGCGTGCAACAAGAAGTTTCACCATAAAGCCCATCTTGTGATGCATCTCAGATCCCACACTGGAGAGAAACCCTTTGAGTGCTCAACGTGTTCGAAGAAGTTTAGTCAAAGAGGTAATCTTCAAACGCACCTTAAGATTCACATTGAAGAAGAGCCCTTTGAGTGCACAGTGTGTCACATGAGGTTCAGTCAAAAAGGCAATCTTCAGACGCATCTCCGCACTCACAACGGAGAGAAGCCTTTTAAGTGCAAGTTGTGCCACAAGTACTTCAGGCAAAAAGGTACTCTTCAAACCCACCTCCGGACTCACACGGGAGAGAAACCCTTTGAGTGTTCAGTGTGTTTTAAGAAGTTCACTGCCGAAACCAACCTTCGAAGCCACCTCCGAAGCCACCTCCGAAGCCACTCTGCTGGCAAGTTCCTTGCGTGCACGGTGTGTAATGAAGAGTTCAAACATGATCGATTCCTTAGGGCACATCTCCGCAGTCACTTAGCAGACGTGAAGCCCTTCGAGTGTTCAGCATGTAACAAGAAGTTCAGTCACCAGGCTCACCTGCGGACACACCTCCGTATTCACACTGGGGAAAAGCCCTTTCCATGCACTGTCTGTTACAAGAAGTTCAGCCAAAAAGGAAGTCTTCAAATTCACTTCCGTACGCACACTGGAGACAGGCCATTTAAGTGCACTGAGTGTCATAAGCAGTTCAGCCATGAACAATACCTGAAAATACACCTTTACAGTCATTTAGCAGCAGCTGACAAACCGTTCGAGTGTTCCGTATGCAATAAGAAGTTTAGTCAACAAGCTAACCTGCGGACACACCTCCGTATTCACAATGGGGAAAAGCCCTTTCCATGCACTGTCTGTTACAAGAAGTTCAGCCAAAAAGTCAGTCTTCAAATTCACTACCGCACGCACTCTGAAGGCAAGCCATATAAGTGCACTGAGTGTCGTAAGCAGTTTAGCCATGAACAATACCTCAAAACACACCTTTATAGTCATTTAGCAGCAGCTGATGAGGCGTTCGAGTGTTCAGTATGCAATAAGAAGTTTAGTCAACCGTCCAACTTTTGTACACATCTCCGTATGCACGCTGGAGAGAAGGAGCTTTGTGTCTAG
- Protein Sequence
- MKLCPDEPKKCLSSHSGRKEFQCLACNKKFHHKAHLVMHLRSHTGEKPFECSTCSKKFSQRGNLQTHLKIHIEEEPFECTVCHMRFSQKGNLQTHLRTHNGEKPFKCKLCHKYFRQKGTLQTHLRTHTGEKPFECSVCFKKFTAETNLRSHLRSHLRSHSAGKFLACTVCNEEFKHDRFLRAHLRSHLADVKPFECSACNKKFSHQAHLRTHLRIHTGEKPFPCTVCYKKFSQKGSLQIHFRTHTGDRPFKCTECHKQFSHEQYLKIHLYSHLAAADKPFECSVCNKKFSQQANLRTHLRIHNGEKPFPCTVCYKKFSQKVSLQIHYRTHSEGKPYKCTECRKQFSHEQYLKTHLYSHLAAADEAFECSVCNKKFSQPSNFCTHLRMHAGEKELCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435246;
- 90% Identity
- iTF_01435246;
- 80% Identity
- iTF_01435246;