Tpal001140.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:4228589-4232152[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 4.2 7.2 0.1 22 51 84 113 70 114 0.84 2 11 0.03 5.5 6.9 0.1 21 52 111 142 109 144 0.89 3 11 0.047 8.7 6.2 0.1 21 47 167 193 156 198 0.83 4 11 0.13 24 4.8 0.0 21 46 195 220 190 227 0.85 5 11 2.3 4.2e+02 0.8 0.0 21 47 223 249 208 254 0.80 6 11 0.15 28 4.6 0.0 21 47 251 277 246 283 0.86 7 11 5.6 1e+03 -0.4 0.1 22 45 280 303 271 310 0.69 8 11 1 1.8e+02 2.0 0.0 21 45 307 331 300 337 0.85 9 11 0.51 94 2.9 0.0 21 45 391 415 385 420 0.86 10 11 3.3 6e+02 0.3 0.0 22 45 450 473 440 476 0.84 11 11 8.4e-05 0.015 15.0 0.0 21 46 477 502 473 506 0.91
Sequence Information
- Coding Sequence
- ATGCTGAACAAAGCTTCCTCGGGTGGTACGGAATTCCCGTTCTCGTCGATGCTGAAAGAGCAAGTCTGCAACGACACAGGgaagaagcctttcgagttcGCGGGTTGCAACACAAAAATTGGTCACGGGCATGAACTCAAAACCAATCATGGAACTCATACAGCAGAAAAGCGTTTCGAATGCACTGTTTGTAATAAGGAGTTCACTACAACGGGCCATCTTAAAATTCATCTCAGAACCCATACCGGGCAGAAGCCTTACGAGTGCGCAGTTTGCAATAGGAAGTTCAGCCAAAGAGGGAACCTCCAAAAACATCTAAAAATCcatacaggggagaagcctttcgagtgcacggTTTGCAATAGGAAGTTCAGTCAAAGAGGGAACCTCCAAAGCCATCTAAAAATCCATACAGGGGAGAAACCTTTCGAGTGCGTAGTATGCAAAAAGAAATTCGGCAGTGTAGTTGATGTCAGAAAACATGCTAGAACTCACACAGGAGAAACGCCTTTCAAGTGCATGGTTTGCAATAAGAAATTTAGTCAAATCAGTAATCTGCGATCTCACCAGAAAATCCATACAGGAGAAAAACCCTTCAAATGCACAATTTGCAATAAGGCATTTAAAGACAGTGGTTATCTGAAAACGCACTTTAGAACCCATACAagggagaagccttttgagtgcacagtttgtAACAAGACATTTGGTTATCAACATGCTCTCCAAATTCATCTCAGAATCCATACGGGAGAGAAGCCATTTGAGTGCTCAGTTTGCAATAAGAAGTTTAGCCAAAGTGGTATTCTTCAAACTCATCTTAGAACCCATTCAGGGCAGAAGCCCTTCGAGTGTGCAGTTTGCAACTCGAAGTTTAGTTCTAACAGTTACCTCCACGCTCATCTCAGAACCCATTCAGGAGAGAAGCCATTCGAGTGCGAAGTTTGCAATAAGAAGTTCAAAAGAAAAAGTGATCTCCAAACTCATCTTAGAACTCATACAGGGGAGAAGCGTTTCGAGTGTgcagtttgcaacaagaagtttggCACTGAAAATAGTGTTAAAATCCATGTTAGGACCCATACAggagagaagcctttcgagtgcacagtttgcacgAAGAAGTTTAGTCGTAAACATGTTCTCATGATTCATTTAAGAACCCATTCAGGGGAAAAGCCCTATAAGTGCACAGTGTGCAATAAGAAATTCAATGATAGAGGCAATCTGTTCAAACATTTAAGAGCCCATTTGGGGCAGAAGTCTTTGGAGTTGGAGTGCGTAGTTTGCAAAAAGAAGTTTGGCACTGGACAGGGACTCAAATACCATGCTAGGACCCATACAGGGGACAAACCTTTCAAGTGCATGGTTTGCAATAAAAAGTTTTCGGCAGCAGGAAGTCTTAGAACTCATCTTAGAACACATACAGGAGAGAAGCCTTTCGGGTGCACACTTTGTTACAAGACGTTTTCTCAAGCAGGCAACCTCAGAACTCATCTCAGGATCCACGGGGGAAAAGCTTGTTAA
- Protein Sequence
- MLNKASSGGTEFPFSSMLKEQVCNDTGKKPFEFAGCNTKIGHGHELKTNHGTHTAEKRFECTVCNKEFTTTGHLKIHLRTHTGQKPYECAVCNRKFSQRGNLQKHLKIHTGEKPFECTVCNRKFSQRGNLQSHLKIHTGEKPFECVVCKKKFGSVVDVRKHARTHTGETPFKCMVCNKKFSQISNLRSHQKIHTGEKPFKCTICNKAFKDSGYLKTHFRTHTREKPFECTVCNKTFGYQHALQIHLRIHTGEKPFECSVCNKKFSQSGILQTHLRTHSGQKPFECAVCNSKFSSNSYLHAHLRTHSGEKPFECEVCNKKFKRKSDLQTHLRTHTGEKRFECAVCNKKFGTENSVKIHVRTHTGEKPFECTVCTKKFSRKHVLMIHLRTHSGEKPYKCTVCNKKFNDRGNLFKHLRAHLGQKSLELECVVCKKKFGTGQGLKYHARTHTGDKPFKCMVCNKKFSAAGSLRTHLRTHTGEKPFGCTLCYKTFSQAGNLRTHLRIHGGKAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435214;
- 90% Identity
- iTF_01435214;
- 80% Identity
- iTF_01435214;