Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:10693468-10697398[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.4 6.2e+02 0.3 0.1 26 47 70 91 57 96 0.77

2 12 0.96 1.8e+02 2.0 0.1 21 46 93 118 89 120 0.87

3 12 0.0062 1.1 9.1 0.1 22 45 122 145 117 153 0.85

4 12 0.49 89 3.0 0.0 21 45 177 201 171 204 0.90

5 12 7.7 1.4e+03 -0.8 0.0 27 45 213 231 209 239 0.88

6 12 4.3 7.8e+02 -0.0 0.0 22 51 264 293 255 294 0.78

7 12 0.0074 1.4 8.8 0.0 20 52 290 322 273 322 0.89

8 12 0.0034 0.63 9.9 0.1 21 46 319 344 316 351 0.86

9 12 2.1 3.8e+02 1.0 0.0 21 44 347 370 343 378 0.82

10 12 0.25 46 3.9 0.0 21 45 375 399 372 408 0.86

11 12 0.0022 0.41 10.5 0.0 21 49 459 487 455 490 0.87

12 12 0.00081 0.15 11.9 0.1 21 52 487 518 485 519 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.4	6.2e+02	0.3	0.1	26	47	70	91	57	96	0.77
2	12	0.96	1.8e+02	2.0	0.1	21	46	93	118	89	120	0.87
3	12	0.0062	1.1	9.1	0.1	22	45	122	145	117	153	0.85
4	12	0.49	89	3.0	0.0	21	45	177	201	171	204	0.90
5	12	7.7	1.4e+03	-0.8	0.0	27	45	213	231	209	239	0.88
6	12	4.3	7.8e+02	-0.0	0.0	22	51	264	293	255	294	0.78
7	12	0.0074	1.4	8.8	0.0	20	52	290	322	273	322	0.89
8	12	0.0034	0.63	9.9	0.1	21	46	319	344	316	351	0.86
9	12	2.1	3.8e+02	1.0	0.0	21	44	347	370	343	378	0.82
10	12	0.25	46	3.9	0.0	21	45	375	399	372	408	0.86
11	12	0.0022	0.41	10.5	0.0	21	49	459	487	455	490	0.87
12	12	0.00081	0.15	11.9	0.1	21	52	487	518	485	519	0.94

Sequence Information

Coding Sequence: ATGTTGCACCTCTACCGCCCGAGTTCTACTTTGATTCCGTGCGCCAAACACCGTTCTTCGGCTACCACCAATTTCAGAAGTCGAGATTTTCTCTCACGCCTCACGGAAACTATGGTCCATAAATGTGCCGTGTGTGCAGCAGAGTTTCCTTCGTTGTCCACGCTGATGCAGCATGGCCGTTCCGACCATCCTGGGCAGAAGCTATTCCAGTGTGACATCTGCAGAAAACAATTTACCTTGAAGGTTAATTTACGAGCTCATGTAAAGACCCATACTCAGGAAAAGCCTTTTAAGTGCGACGTCTGCGGTTTGAAGCTACGTCGTCGGGGACACCTCGAGAATCATCTCAGGATCCATACAGGAGAGATGCCATTTGAATGCACCCTTTGCCACAAGAAGTTCCGTCAAGACTCTAACCTTCGACTTCACGCTAGGACTCATGCAGGAGTGAAACCTTACGAGTGTACAGTTTGTGATAAGACATTCACTTACAAGGGAGACCTCACGGTACATCTTAGAACCCATACTGGAGAAAGGCCCTACGAGTGTACGTTTTGCAATAAGAGGTTCAATACAGGGGTAGATCTGAGACGTCATGCGGAGACACATGGAGATGGAGAGTCTAAAAATTTGGAGTGCGCAGTTTGCAATAAGGCGTTCAAAACTGGTGCTGCCCTCAGAGCGCACCTTGCGACCCACACAGGGGAGAAGCGCTATGAGTGCGCGAAGTGCAACATGAAGTTTGTTCGCCGAAGCAATTTGAAGATACATCTTAAAACACACTCCGATGAAAAGTCTTTTGAATGCTTGGTTTGCGGGAAGAGGTTCAAACTACAAGATTACCTACGAAAACATCTAAAAGTCCACAGAGATGAGAAACCTTTCGAGTGCTCGGTTTGCGATATGAAGTTCAGGGAACGAGGAAATCTGAAAAGTCATCTTCAAATCCACAAGGAagagaagccttttgagtgcGCCATTTGCTTTAAGAAGTTCAGAACCTCATTTCGCCTGCGCCTTCACATTCGAACCCACACGGGAGAAAAGCCTCACGAGTGCACCGTTTGCGGTAAGAAGTTTAGATCATCAGGTGGTCTTACAATTCATTGTTTAATTCACACAGGTGaaaagcctttcgagtgctcTGTGTGCAGTAAGAAGTTCAATCAAAAAGCTAACCTCGCAACTCATGTTAAGAGTCATTTAAACGAAAAACCTTACGAGTGCTCGAAATGTAAAAGGAAGTTTGCCAAGAAAGAGTATCTGAAAAGTCATCTTCAAACCCATTTAGATGAGAAGCCTTTCGAATGCTCAGTTTGTTGTATGAAGTTCAAAAGGCAAGATTGCCTAATTCTTCATCTCAAAACCCACACAGGAGAGAGACCGTTTGAGTGCTCGGTGTGTGGCTGGAAGTTCAGGGTGTCAGGTAATCTTCGGAGTCATCTGAGAATCCATACAGGAGAAAAGCCTTTTGAGTGCTCGGtgtgcaacaagaagttcagctATTCAGCCAATCTCCGGACTCATTTAAAAACTCATATTGTGGCCAAGCCGTACAAGTGCACGGAATGCAATAAATTGTTCAGCGAAAGAAATCATCTGATAGATCATCTTACAACACATTTAGAGGAGAGTTCATGA
Protein Sequence: MLHLYRPSSTLIPCAKHRSSATTNFRSRDFLSRLTETMVHKCAVCAAEFPSLSTLMQHGRSDHPGQKLFQCDICRKQFTLKVNLRAHVKTHTQEKPFKCDVCGLKLRRRGHLENHLRIHTGEMPFECTLCHKKFRQDSNLRLHARTHAGVKPYECTVCDKTFTYKGDLTVHLRTHTGERPYECTFCNKRFNTGVDLRRHAETHGDGESKNLECAVCNKAFKTGAALRAHLATHTGEKRYECAKCNMKFVRRSNLKIHLKTHSDEKSFECLVCGKRFKLQDYLRKHLKVHRDEKPFECSVCDMKFRERGNLKSHLQIHKEEKPFECAICFKKFRTSFRLRLHIRTHTGEKPHECTVCGKKFRSSGGLTIHCLIHTGEKPFECSVCSKKFNQKANLATHVKSHLNEKPYECSKCKRKFAKKEYLKSHLQTHLDEKPFECSVCCMKFKRQDCLILHLKTHTGERPFECSVCGWKFRVSGNLRSHLRIHTGEKPFECSVCNKKFSYSANLRTHLKTHIVAKPYKCTECNKLFSERNHLIDHLTTHLEESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435212;
90% Identity: iTF_01435212;
80% Identity: iTF_01435212;