Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:3982672-3987279[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.037 6.8 6.6 0.1 21 45 58 82 51 85 0.89

2 11 0.00038 0.069 12.9 0.1 21 45 86 110 82 113 0.91

3 11 0.0024 0.44 10.4 0.0 21 45 114 138 110 141 0.90

4 11 0.0091 1.7 8.5 0.0 21 46 142 167 138 173 0.86

5 11 1.1 2e+02 1.9 0.3 21 44 170 193 166 197 0.88

6 11 1.7 3e+02 1.3 0.2 22 45 199 222 190 229 0.82

7 11 2.9 5.2e+02 0.5 0.2 21 44 226 249 214 256 0.77

8 11 0.84 1.5e+02 2.2 0.2 26 44 259 277 242 281 0.84

9 11 0.038 7 6.5 0.1 21 45 282 306 278 313 0.86

10 11 0.54 99 2.8 0.1 21 47 310 336 306 341 0.84

11 11 0.0042 0.78 9.6 0.1 21 46 338 363 334 370 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.037	6.8	6.6	0.1	21	45	58	82	51	85	0.89
2	11	0.00038	0.069	12.9	0.1	21	45	86	110	82	113	0.91
3	11	0.0024	0.44	10.4	0.0	21	45	114	138	110	141	0.90
4	11	0.0091	1.7	8.5	0.0	21	46	142	167	138	173	0.86
5	11	1.1	2e+02	1.9	0.3	21	44	170	193	166	197	0.88
6	11	1.7	3e+02	1.3	0.2	22	45	199	222	190	229	0.82
7	11	2.9	5.2e+02	0.5	0.2	21	44	226	249	214	256	0.77
8	11	0.84	1.5e+02	2.2	0.2	26	44	259	277	242	281	0.84
9	11	0.038	7	6.5	0.1	21	45	282	306	278	313	0.86
10	11	0.54	99	2.8	0.1	21	47	310	336	306	341	0.84
11	11	0.0042	0.78	9.6	0.1	21	46	338	363	334	370	0.87

Sequence Information

Coding Sequence: ATGGCGGGGAATTCCTGGGAGTGCCACGACTGCAACAAGACGTTCAGCAAGAAGTCGACCCTTTCGAGTCATCGTCGAGTCCATCATATGGATGGGCtgttcgagtgcacagtttgccgAAAGAAGTTCACTCACATAAGTACCCTCTATAAACATGTCAGAATTcatacaggggagaagcctttcgagtgcgtGGTTTGCTATAAGAAGTTCAGTGAAACTAGCAGACTCCGAATTCATCTTAGAACTCATACGGGGGAGAAGCCATACGAGTGCgcagtttgcaacaagaagttcaatCAATCTAGCAACCTTCGAACTCATCTTAGAACCCACACAGAggagaagccttttgagtgcGCAACTTGCAATAAGACATTCAAACAAGCTTGGAACCTTCGAACTCATCTTAGAACCCATACAGGAGAGAAGCcattcgagtgcacagtttgcagtAAGAAGTTCAACCAATCTGGTAAACTCCGAATTCATCTTAGAACTcatacaggggagaagccattcgagtgcacagtttgcaacaagacGTGCAGTACAGCTAGTCACCTTAGATCGCATGTTAGAACTCATACAGGGGAGAAGCaattcgagtgcacagtttgccaTAAAAAGTTCCATGAAACTAGTAAACTCCGAATTCATCTTAGATCCcatacaggggagaagccATACGAGTGCATAGTTTGCGATAAAAGGTTCAGTAGAACTGACACACTCCGAATTCACGTTAGAACTCATACAGAGAAGAAGCTCTACGAatgcacagtttgcaacaagacGTTCAATCATGCTAGTAACCTTCGGTCTCATGTTAGAACTcatacaggggagaagccCTACGAGTGCAGCGTTTGCAACAAGACGTTCAATCATGCTGGTAACCTTCGATCTCATGTTAGAACTCATACTGGGGAGAAGCcattcgagtgcacagtttgcgaAAGGAAGTTAAGTAGTTTGAATAGTCTTCGAAGTCATCTTAATACCcacacaggggagaagccttacAAGTGCTCAGTTTGTAGCAAGAATTTTCGGTCTTCACAAGGTCTCCGAATTCATCTTAAAAACcacacaggggagaagccATACGAGTGA
Protein Sequence: MAGNSWECHDCNKTFSKKSTLSSHRRVHHMDGLFECTVCRKKFTHISTLYKHVRIHTGEKPFECVVCYKKFSETSRLRIHLRTHTGEKPYECAVCNKKFNQSSNLRTHLRTHTEEKPFECATCNKTFKQAWNLRTHLRTHTGEKPFECTVCSKKFNQSGKLRIHLRTHTGEKPFECTVCNKTCSTASHLRSHVRTHTGEKQFECTVCHKKFHETSKLRIHLRSHTGEKPYECIVCDKRFSRTDTLRIHVRTHTEKKLYECTVCNKTFNHASNLRSHVRTHTGEKPYECSVCNKTFNHAGNLRSHVRTHTGEKPFECTVCERKLSSLNSLRSHLNTHTGEKPYKCSVCSKNFRSSQGLRIHLKNHTGEKPYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435232;
90% Identity: iTF_01435232;
80% Identity: iTF_01435232;