Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:8700594-8708247[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.049 9 6.2 0.0 20 49 26 55 11 58 0.83

2 17 0.23 42 4.0 0.0 21 46 55 80 51 88 0.89

3 17 0.095 17 5.3 0.0 21 47 111 137 94 143 0.82

4 17 2.4 4.3e+02 0.8 0.0 22 47 140 165 135 170 0.82

5 17 0.48 88 3.0 0.0 22 46 168 192 163 195 0.89

6 17 3.3 6.1e+02 0.3 0.0 26 46 200 220 194 222 0.87

7 17 0.12 22 4.9 0.0 22 45 224 247 220 251 0.92

8 17 0.067 12 5.7 0.1 21 45 251 275 247 282 0.89

9 17 5.4 9.9e+02 -0.4 0.0 21 44 279 302 275 306 0.85

10 17 0.012 2.2 8.2 0.0 21 46 307 332 299 338 0.87

11 17 0.022 4 7.3 0.0 21 45 335 359 331 362 0.91

12 17 0.016 2.9 7.7 0.0 21 46 363 388 359 394 0.86

13 17 0.021 3.8 7.4 0.0 21 45 391 415 387 419 0.90

14 17 0.078 14 5.5 0.1 21 45 419 443 415 446 0.89

15 17 1.3 2.4e+02 1.6 0.2 21 45 447 471 443 478 0.87

16 17 2.2 4e+02 0.9 0.0 21 46 475 500 471 506 0.83

17 17 0.52 96 2.9 0.0 21 45 503 527 499 530 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.049	9	6.2	0.0	20	49	26	55	11	58	0.83
2	17	0.23	42	4.0	0.0	21	46	55	80	51	88	0.89
3	17	0.095	17	5.3	0.0	21	47	111	137	94	143	0.82
4	17	2.4	4.3e+02	0.8	0.0	22	47	140	165	135	170	0.82
5	17	0.48	88	3.0	0.0	22	46	168	192	163	195	0.89
6	17	3.3	6.1e+02	0.3	0.0	26	46	200	220	194	222	0.87
7	17	0.12	22	4.9	0.0	22	45	224	247	220	251	0.92
8	17	0.067	12	5.7	0.1	21	45	251	275	247	282	0.89
9	17	5.4	9.9e+02	-0.4	0.0	21	44	279	302	275	306	0.85
10	17	0.012	2.2	8.2	0.0	21	46	307	332	299	338	0.87
11	17	0.022	4	7.3	0.0	21	45	335	359	331	362	0.91
12	17	0.016	2.9	7.7	0.0	21	46	363	388	359	394	0.86
13	17	0.021	3.8	7.4	0.0	21	45	391	415	387	419	0.90
14	17	0.078	14	5.5	0.1	21	45	419	443	415	446	0.89
15	17	1.3	2.4e+02	1.6	0.2	21	45	447	471	443	478	0.87
16	17	2.2	4e+02	0.9	0.0	21	46	475	500	471	506	0.83
17	17	0.52	96	2.9	0.0	21	45	503	527	499	530	0.89

Sequence Information

Coding Sequence: ATGGCGCACGACTGTCCAGTGTGCGGTAAGAAGAATGGGTCCGCGTCCAGTCTGACAGAGCACCTGCGGACCCACACGGGAGAGAAACCTTTTGAGTGCACGGTTTGTGACGGGAAGTTCAGCCAACGTAGCAACTTCAAAACGCACCTCCGGATCCATACAGGAGAGaagccctttgagtgcacggTTTGCGACAAGAAGTTCAGCGAAGGTAGCAGCCTCAGAAAGCATCTCCGGATCCATACAGGGGAGAGGCCCtttgagtgcacagtttgcaacaagaagttcagcgATGGTAGCACCTTCAAAACGCACCTCCGGACCCACACAGGAGAGAGGCCCtttgagtgcacagtttgcaacagAAAGTTCATTCAAGGTAACGGCCTCAGAGCACACCTCCGGACCCACACAGGTGAcaagccctttgagtgcacagtttgcaacagAAAGTTCATTAAAGGTGACAGCCTCAGAGCACACCTCCAGACCCACACAGGAGAcaagccctttgagtgcacggTTTGCGACAAAAAGTTCAGCGAACGTAGTAATTTTAAAAGGCACCTCCGGATCCACACAGGGGAGAGGCTCTTTGAGTGCACGGTTTGCGACAAGAAGTTCAGCCAAGGAGGAGACCTCAGAGTTCATCTCCGGATCCACATAGGAGAGAGGCCCtttgagtgcacagtttgcaacacGAAGTTCAGCCAAGGAGGAGACCTCAGAGTTCACCTCCGGACCCACACAGGAGAAAGgccctttgagtgcacggTTTGCAACAGGAAGTTCATCCAAGGTAAGGACCTCAGAGTTCACCTCCGGACCCACACAGGAGAGAGGCCCTTTGAGTGCGTAGtgtgcaacaagaagttcagcgAAGGTGGCGGCCTCAGAGTGCATCTCCGGACCCACACGGGAGAGaagccctttgagtgcacggtttgcaacaagaagttcaggCAAGGAGGATACCTCAGAGTTCATCTCCGGACCCACACAGGAGAGaagccctttgagtgcacggtttgcaacaagaagttcaggCAAGGAGGATACCTTAGAGTTCATCTCCGGACCCACACAGGAGAGAGgccctttgagtgcacggtttgcaacaagaagttcaggCAAGGAGGATACCTCAGAGTTCATCTCCGGACCCACACAGGAGAGaagccctttgagtgcacggtttgcaacaagaagttcaggCAAGGAGGATACCTCAGAGTTCATCTCCGGACCCACACAGAAGAGAGgccctttgagtgcacggTTTGCAACAGGAAGTTCATCCAAGGTAAGGACCTCAGAGTTCACCTCCGGACCCACACAGGCGAGAGGCCCtttgagtgcacagtttgcaacagAAAGTTCATTAAAGGTAACGCCCTCAGAGCACACCTCCGGACCCACACAGGAGAGAGGCCCTTTGAGTGCACAGtgtgcaacaagaagttcagcgAAGGGGGCGGCCTCAGAGTGCATCTCCGGACCCACACGGGAGAGAAGCCCTATGAGTGcacggtttgcaacaagaactTCAGCCAAGGATCATATCTAAAAAATCATCTGCGAACCCACAACAAGTAA
Protein Sequence: MAHDCPVCGKKNGSASSLTEHLRTHTGEKPFECTVCDGKFSQRSNFKTHLRIHTGEKPFECTVCDKKFSEGSSLRKHLRIHTGERPFECTVCNKKFSDGSTFKTHLRTHTGERPFECTVCNRKFIQGNGLRAHLRTHTGDKPFECTVCNRKFIKGDSLRAHLQTHTGDKPFECTVCDKKFSERSNFKRHLRIHTGERLFECTVCDKKFSQGGDLRVHLRIHIGERPFECTVCNTKFSQGGDLRVHLRTHTGERPFECTVCNRKFIQGKDLRVHLRTHTGERPFECVVCNKKFSEGGGLRVHLRTHTGEKPFECTVCNKKFRQGGYLRVHLRTHTGEKPFECTVCNKKFRQGGYLRVHLRTHTGERPFECTVCNKKFRQGGYLRVHLRTHTGEKPFECTVCNKKFRQGGYLRVHLRTHTEERPFECTVCNRKFIQGKDLRVHLRTHTGERPFECTVCNRKFIKGNALRAHLRTHTGERPFECTVCNKKFSEGGGLRVHLRTHTGEKPYECTVCNKNFSQGSYLKNHLRTHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435207;
90% Identity: iTF_01435207;
80% Identity: iTF_01435207;