Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4147310-4152979[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.073 13 5.6 0.0 21 45 83 107 77 114 0.90

2 11 0.33 60 3.5 0.0 26 45 116 135 108 138 0.87

3 11 0.0053 0.97 9.3 0.0 21 45 139 163 135 166 0.91

4 11 0.0011 0.2 11.5 0.0 21 47 167 193 162 198 0.85

5 11 0.00052 0.094 12.5 0.0 21 47 195 221 191 226 0.86

6 11 0.093 17 5.3 0.0 21 46 223 248 220 255 0.86

7 11 1 1.9e+02 1.9 0.0 21 46 251 276 247 282 0.84

8 11 0.094 17 5.3 0.0 21 46 279 304 275 310 0.86

9 11 2 3.7e+02 1.0 0.0 21 45 307 331 305 334 0.87

10 11 0.0023 0.42 10.4 0.0 21 47 335 361 331 366 0.87

11 11 0.0074 1.4 8.8 0.0 21 45 363 387 359 391 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.073	13	5.6	21	45	83	107	77	114	0.90
2	11	0.33	60	3.5	26	45	116	135	108	138	0.87
3	11	0.0053	0.97	9.3	21	45	139	163	135	166	0.91
4	11	0.0011	0.2	11.5	21	47	167	193	162	198	0.85
5	11	0.00052	0.094	12.5	21	47	195	221	191	226	0.86
6	11	0.093	17	5.3	21	46	223	248	220	255	0.86
7	11	1	1.9e+02	1.9	21	46	251	276	247	282	0.84
8	11	0.094	17	5.3	21	46	279	304	275	310	0.86
9	11	2	3.7e+02	1.0	21	45	307	331	305	334	0.87
10	11	0.0023	0.42	10.4	21	47	335	361	331	366	0.87
11	11	0.0074	1.4	8.8	21	45	363	387	359	391	0.90

Sequence Information

Coding Sequence: ATGGTCAAGTCACGTTCTTCGAGTTGTGCAGCATTCTCTCCTGCGCCGGAGTCGACGGTGCATCTCAACAGCAGTGCATCAGGAAAGACTGTCCATTGCTCAGATAGCGATACAAAATGTAGTGGGAAGGACCAGCTCAGCAGTCATTCGAGAACCCACACTGGGAAGAAGCGTTTCGAGTGCGCAGTGTGCAACCAGAAGTTCAATCGAAGAGGTCATGTCGCGGATCATCTTAGAACCCATACAGGAGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGCCAAACAGGCCATCTCCGACTTCATCTTAAAACCCACACAGGGGAAAAGcttttcgagtgcacagtttgcaaccAGAAGTTCAGACAAGCAGGCACTCTTCGAGGTCATGTCAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcttATTGAAGTTCAGTCAAACAGGCACTCTTCGACGTCATCTTAGAACCCATTCAGGGGaaaagcctttcgagtgcgcaGTTTGCAACCAGAAGTTCAGGCAAGCAGGCACTCTTCGAGAACATCTTAAAACCCACTCAGGGGaaaagcctttcgagtgcgcaGTTTGCAACCAGAAGTTCAGGCAAGCAGGCACTCTTCGAAAACATCTTAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGACGAGCAGGCACTCTTCGAGGTCATGTTAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGTGTAGCAAGCTATCTCCGACTTCATCTTAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGACGAGCAGGCACTCTTCGAGGTCATGTTAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGTGTAGCAAGCTATCTCCGACTTCATCTTAAAACCCACACAGGGGaaaagcctttcgagtgcacagtttgcaaccAGAAGTTCAGACAAGCAGGCACTCTTCGAGATCATCTTAAAACCCACACAGGGGAAAAGCCTTTTGAGTGCCCAGTTTGCAATAGAATGTTCCGCCATGCATCTGTTCTCAAATGGCATCTTCGAACGCACTCAGGGGATAAGTCTTAA
Protein Sequence: MVKSRSSSCAAFSPAPESTVHLNSSASGKTVHCSDSDTKCSGKDQLSSHSRTHTGKKRFECAVCNQKFNRRGHVADHLRTHTGEKPFECTVCNQKFSQTGHLRLHLKTHTGEKLFECTVCNQKFRQAGTLRGHVKTHTGEKPFECTVCLLKFSQTGTLRRHLRTHSGEKPFECAVCNQKFRQAGTLREHLKTHSGEKPFECAVCNQKFRQAGTLRKHLKTHTGEKPFECTVCNQKFRRAGTLRGHVKTHTGEKPFECTVCNQKFSVASYLRLHLKTHTGEKPFECTVCNQKFRRAGTLRGHVKTHTGEKPFECTVCNQKFSVASYLRLHLKTHTGEKPFECTVCNQKFRQAGTLRDHLKTHTGEKPFECPVCNRMFRHASVLKWHLRTHSGDKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435242;
90% Identity: iTF_01435242;
80% Identity: iTF_01435242;