Tpal009504.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1646845-1652899[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.19 35 4.3 0.1 21 52 27 58 19 59 0.87 2 14 5.3 9.7e+02 -0.3 0.0 22 45 56 79 53 86 0.82 3 14 0.0019 0.35 10.7 0.1 21 46 83 108 75 114 0.85 4 14 0.091 17 5.3 0.0 20 45 110 135 106 138 0.88 5 14 0.052 9.4 6.1 0.1 20 44 138 162 135 166 0.91 6 14 0.0071 1.3 8.9 0.0 22 46 168 192 163 198 0.87 7 14 0.031 5.7 6.8 0.1 21 46 195 220 191 226 0.86 8 14 0.015 2.7 7.8 0.0 21 46 223 248 219 254 0.86 9 14 0.03 5.4 6.9 0.1 21 47 251 277 247 283 0.86 10 14 1.8 3.4e+02 1.1 0.0 22 46 280 304 276 310 0.84 11 14 0.0071 1.3 8.9 0.0 21 46 307 332 294 338 0.83 12 14 0.03 5.4 6.9 0.1 21 46 335 360 331 366 0.86 13 14 0.38 70 3.3 0.0 22 45 364 387 359 390 0.89 14 14 0.11 20 5.1 0.1 21 46 391 416 387 423 0.85
Sequence Information
- Coding Sequence
- ATGGCCCACCGATGCGCCGTGTGCGCCAAGGAGTTCCGTTATAGGTCAGTGCTGACGGCGCATCTCCGCTGCCACACCggagagaagcctttcgaaTGTTCGGTCTGCAGCAAGAAGTTTAGTCAAGCTGCACACTTATCAACGCACCTCCGCATCCACACCGGGGACAAGCCTTTCGAATGTTCGGTTTGCGAAAAGAAGTTTAGTCATGCTGGACAGCTCAGAAGCCACATCCGAACTCATACCggagagaagccttttgaATGTTCGGTGTGCAATAAGAAGTTTAGTCAAACTTCTAACCTCAGAAGTCACCTCAGTACCCACACCGGAGAAAAGCCTTTCGGGTGTTCGGTCTGTGACAAGAGGTTCAGTCATGATGGACACTTAAGACGTCACCTCCGCACCCACACCAGCGAGAAACCTTTTGAATGTTTGGTCTGCAATAAGAAGTTCAGCCAAACTGAACACCTTAGAACGCACATCCGTACCCATATCGGAGAAAAGCCTTTCGAATGTTTGGTCTGCAAGAAGAAGTTTAGAGAAACTGGGAACCTCAGAAGTCACCTCCGTACCCACACCGGAGaaaagcctttcgagtgtTCGGTCTGCAGCAAGAAGTTTAGACAAGCTGCACACTTATCAACGCACCTccgcacccacaccggggagaagccattTGAATGTTCGGTCTGCAATAAGAAGTTTAGGCAAACTGGGGCGCTAAAATCTCACCTCCGCACCCACACCGGAGAAAAGCCTTTCGATTGTTCGGTCTGCAGCAAGAAGTTTAGTCAAGCTGCACACTTAACAAGGCACCTccgcacccacaccggggaCAAGCCTTTCGAATGTGTGgtctgcaacaagaagtttcTTAAAGGTGGAAACCTAAAATCGCACCTCCGCACCCACACCGGCGAGAAGCCATTTGAATGTTCGGTCTGCAATAAGAAGTTTAGGCAAACTGGGGAGCTAAAATCTCACCTCCGCACCCACACCGGAGAAAAGCCTTTGGATTGTTCGGTCTGCAGCAAGAAGTTTAGTCAAGCTGCACACTTAACAAGGCACCTccgcacccacaccggggaCAAGCCTTTCGAATGTGTGgtctgcaacaagaagtttcTTCAAGGTGGAAACCTAAAATCGCACCTCCGCACCCACACCGGCGAGAAGCCATTCGAATGTTCGGTCTGCAATAAGAAGTTTAGTCAAGCAGCACACCTCAGAAGTCACTTCCGTACCCACACCGGAGAAAAGCCTGTCGGTCTGCAACGAGAAGTTAAGTAA
- Protein Sequence
- MAHRCAVCAKEFRYRSVLTAHLRCHTGEKPFECSVCSKKFSQAAHLSTHLRIHTGDKPFECSVCEKKFSHAGQLRSHIRTHTGEKPFECSVCNKKFSQTSNLRSHLSTHTGEKPFGCSVCDKRFSHDGHLRRHLRTHTSEKPFECLVCNKKFSQTEHLRTHIRTHIGEKPFECLVCKKKFRETGNLRSHLRTHTGEKPFECSVCSKKFRQAAHLSTHLRTHTGEKPFECSVCNKKFRQTGALKSHLRTHTGEKPFDCSVCSKKFSQAAHLTRHLRTHTGDKPFECVVCNKKFLKGGNLKSHLRTHTGEKPFECSVCNKKFRQTGELKSHLRTHTGEKPLDCSVCSKKFSQAAHLTRHLRTHTGDKPFECVVCNKKFLQGGNLKSHLRTHTGEKPFECSVCNKKFSQAAHLRSHFRTHTGEKPVGLQREVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435223;
- 90% Identity
- iTF_01435223;
- 80% Identity
- iTF_01435223;