Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:3748059-3754671[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1 3.8e+02 1.0 0.0 26 44 34 52 28 56 0.88

2 18 0.0047 0.85 9.5 0.0 21 45 57 81 52 84 0.91

3 18 0.0027 0.5 10.2 0.0 21 47 85 111 81 117 0.86

4 18 1.6 3e+02 1.3 0.0 21 46 113 138 109 143 0.87

5 18 2.9 5.2e+02 0.5 0.0 22 45 142 165 137 172 0.86

6 18 1.5 2.7e+02 1.5 0.0 22 44 170 192 165 198 0.86

7 18 0.86 1.6e+02 2.2 0.1 26 49 202 225 194 230 0.86

8 18 8.5 1.6e+03 -1.0 0.1 25 46 230 250 222 256 0.68

9 18 1.6 2.8e+02 1.4 0.3 21 45 253 274 247 281 0.70

10 18 0.037 6.8 6.6 0.0 21 45 278 302 274 308 0.90

11 18 0.0062 1.1 9.0 0.2 21 45 306 330 302 333 0.91

12 18 0.023 4.2 7.2 0.0 21 46 334 359 330 365 0.86

13 18 0.34 62 3.5 0.0 21 46 362 387 358 394 0.84

14 18 1.6 2.9e+02 1.3 0.0 21 45 390 414 386 417 0.88

15 18 0.0087 1.6 8.6 0.0 21 47 418 444 413 450 0.85

16 18 0.69 1.3e+02 2.5 0.2 22 44 447 469 443 474 0.89

17 18 0.00029 0.053 13.3 0.0 21 46 474 499 471 505 0.87

18 18 0.12 21 5.0 0.0 21 44 502 525 498 529 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1	3.8e+02	1.0	0.0	26	44	34	52	28	56	0.88
2	18	0.0047	0.85	9.5	0.0	21	45	57	81	52	84	0.91
3	18	0.0027	0.5	10.2	0.0	21	47	85	111	81	117	0.86
4	18	1.6	3e+02	1.3	0.0	21	46	113	138	109	143	0.87
5	18	2.9	5.2e+02	0.5	0.0	22	45	142	165	137	172	0.86
6	18	1.5	2.7e+02	1.5	0.0	22	44	170	192	165	198	0.86
7	18	0.86	1.6e+02	2.2	0.1	26	49	202	225	194	230	0.86
8	18	8.5	1.6e+03	-1.0	0.1	25	46	230	250	222	256	0.68
9	18	1.6	2.8e+02	1.4	0.3	21	45	253	274	247	281	0.70
10	18	0.037	6.8	6.6	0.0	21	45	278	302	274	308	0.90
11	18	0.0062	1.1	9.0	0.2	21	45	306	330	302	333	0.91
12	18	0.023	4.2	7.2	0.0	21	46	334	359	330	365	0.86
13	18	0.34	62	3.5	0.0	21	46	362	387	358	394	0.84
14	18	1.6	2.9e+02	1.3	0.0	21	45	390	414	386	417	0.88
15	18	0.0087	1.6	8.6	0.0	21	47	418	444	413	450	0.85
16	18	0.69	1.3e+02	2.5	0.2	22	44	447	469	443	474	0.89
17	18	0.00029	0.053	13.3	0.0	21	46	474	499	471	505	0.87
18	18	0.12	21	5.0	0.0	21	44	502	525	498	529	0.85

Sequence Information

Coding Sequence: ATGAGCGCCGCCAGTGAAATCAAAACGAAGCAGATCAAAATGACTACTATAGGAACAGCTTCGTCGCACCGACCTACTCTGacagcaaaaaaaatgttCGAGTGCTCAGTTTGTAAAGAGAAGTTTAGTTCAAGTAGTAACCTTCGTGTGCACTTTCGGACCCACACGGGAGAAAAGCCATTCGAGTGCTCAGTTTGTTTTAAGAAGTTCAGTCAAAGTGGAAGCCTTCGTCCACACCTTCGTACCCATACAGGAGAAAAACCATTCGAGTGCTCAGTTTGTTTTAAGAAGTTCAGTCAAAGTGGAAGCCTTCGTCCACACCTTCGTACCCATACAGGAGAAAAACCATTCGAGTGCTCAGTTTGTAATAAGAAATTCGGCGAAGGTGGCAAACTTCGTTTGCACCTTCGAATCCACACAGGAGAAAAGTCATTAGAGTGTTCAGTTTGCAAAAAGAAGTTTCGATTTGATAGTACCTTACGTGTGCACCTTCGCACCCATACAGGAGAAAAGCAGTTTAAGTGCTCCGTTTGTGAAAAGAAGTTTACGAAAAGTAGTCACCTCCGTTCTCACCTTGGCACCCATACAGAAGGAGAACGTCTTGGATGCTCGATTTGCAATAAGATGTTCAGTAACGGAAATACTCTTCGTGCCCACCTGCTTCGTTCCCACACAATAAAAAAGCAAGCTGAGTGTTTAGTTTGTAACAAGAAGTTTTCTGCTGATAACCTGCGTGTGCACCTTCGAACCCATACAGGAGAAAAACCTTATGAGTGTACAATTTGTAAAAAAAGGTATAGCAACATTCGTTTGCACCTCCGCACCCACAATGGGGAAAAGCCATTCAAGTGCTCTGTTTGTAATAAGTCGTTTAGAGAAGCTGGTAAACTTCGCTTGCACCTACGGACCCATACAGGCGAAAAACCTTTTGAGTGCTCAGTTTGTAGGAAGAAGTTTAACCAAGGTAGTCACCTTCGTAGGCACCTTCGCACCCATACTGGAGAGGAACCATTCGAGTGCTCAGTTTGTTTTAAGAAGTTCAGTGAAAGTGGAAGCCTTCGTTCGCACCTTCGTACCCATACAGGAGAAAAACCATTCGAGTGCTCAATTTGTAATAAGAAATTCGGTGAAGCTGGTAAACTTCGTTTGCACCTTCGAACCCATACAGGTGAAAAGCCGTTTGAATGCTTAGTTTGTGAAAAGAAGTTTAGTATTCATGGTAACCTTCGTGTGCACCTACGGACCCATACAGGAGAAAAACCGTTTGAGTGCTCagtttgtaaaaaaaagtttcgTACAAGTGGTAACCTTCATGTGCACCTTCGGACCCATACAGGAAAAAAGCCATTCGAGTGCTCAGTTTGTAATCAAAGTTGTCGCCATGATAATGGATTACGAAATCACATTCTTACCCATACAGGAGAAAAACCACACGAGTGCTCAGTTTGTTATAAGAAGTTCAGTCGAAGTGGAAACCTTCGTTTTCACCTTCGCACCCATACAGGAGAAAAGCCATTCAAGTGCACAGTTTGTTACATGAAGTTTAGCCAAGGTGGTCACCTTCTTTTGCACCTTCGGACTCATATAGGATAA
Protein Sequence: MSAASEIKTKQIKMTTIGTASSHRPTLTAKKMFECSVCKEKFSSSSNLRVHFRTHTGEKPFECSVCFKKFSQSGSLRPHLRTHTGEKPFECSVCFKKFSQSGSLRPHLRTHTGEKPFECSVCNKKFGEGGKLRLHLRIHTGEKSLECSVCKKKFRFDSTLRVHLRTHTGEKQFKCSVCEKKFTKSSHLRSHLGTHTEGERLGCSICNKMFSNGNTLRAHLLRSHTIKKQAECLVCNKKFSADNLRVHLRTHTGEKPYECTICKKRYSNIRLHLRTHNGEKPFKCSVCNKSFREAGKLRLHLRTHTGEKPFECSVCRKKFNQGSHLRRHLRTHTGEEPFECSVCFKKFSESGSLRSHLRTHTGEKPFECSICNKKFGEAGKLRLHLRTHTGEKPFECLVCEKKFSIHGNLRVHLRTHTGEKPFECSVCKKKFRTSGNLHVHLRTHTGKKPFECSVCNQSCRHDNGLRNHILTHTGEKPHECSVCYKKFSRSGNLRFHLRTHTGEKPFKCTVCYMKFSQGGHLLLHLRTHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435222;
90% Identity: iTF_01435222;
80% Identity: iTF_01435222;