Tpal008028.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:11029902-11052067[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.93 1.7e+02 2.1 0.1 15 51 21 57 16 59 0.86 2 22 5.3 9.8e+02 -0.3 0.0 21 47 55 81 51 86 0.83 3 22 0.1 18 5.2 0.0 23 45 85 107 66 110 0.89 4 22 0.0045 0.82 9.5 0.0 21 52 111 142 107 143 0.87 5 22 0.012 2.3 8.1 0.1 22 43 140 161 137 166 0.90 6 22 0.00089 0.16 11.8 0.1 22 46 168 192 163 198 0.90 7 22 0.0097 1.8 8.4 0.0 22 46 196 220 193 226 0.87 8 22 0.0016 0.3 10.9 0.0 21 49 223 251 219 254 0.86 9 22 0.00087 0.16 11.8 0.0 21 45 251 275 247 278 0.92 10 22 0.11 20 5.1 0.1 21 46 279 304 275 306 0.90 11 22 0.00081 0.15 11.9 0.0 21 45 307 331 303 334 0.92 12 22 0.0014 0.25 11.2 0.0 21 45 335 359 332 364 0.91 13 22 1.1 2.1e+02 1.8 0.0 15 51 471 507 465 509 0.86 14 22 0.34 62 3.5 0.1 21 51 505 535 501 538 0.85 15 22 0.91 1.7e+02 2.1 0.1 23 46 535 558 515 564 0.83 16 22 0.0052 0.94 9.3 0.0 21 45 561 585 555 588 0.91 17 22 0.049 8.9 6.2 0.0 21 49 589 617 585 620 0.86 18 22 0.0065 1.2 9.0 0.0 21 45 617 641 613 644 0.91 19 22 0.049 8.9 6.2 0.0 21 49 645 673 641 676 0.86 20 22 0.013 2.3 8.1 0.0 21 45 673 697 669 700 0.91 21 22 0.0063 1.1 9.0 0.0 21 46 701 726 697 732 0.86 22 22 0.037 6.8 6.6 0.0 22 44 730 752 725 755 0.90
Sequence Information
- Coding Sequence
- ATGGCCCTTGAGAGTGCACAgtgcggcgaggaggcggcatcgtcagcggcgccgcgtgctccACGAGGAAAGCGTGGAGGGCAGCAGGCGCTCCACTGTGCAGTCTGCGAGAAGGAGTTCCGATTCAACAGTGGCCTCCAGGCGCACTTGCgaatccacaccggggagaagcctttcgagtgcacgtTCTGCGAGGAGAAGTTTGCTCAAAAGAGTCACCTTACAACGCACCTTCGCACCCACACCAAGGTGAAGCCGTTTGAGTGCGTAGTTTGCCAGAAGAAGTTCTCTCAAAGTGGGAATCTAAAATTGCACCTTCAGACCCACTCCGAGGAGAAGCCCTTCGAGTGCGCAGTTTGTCTGAAGAAGTTTTCAGTGAGTGCGAATCTGAGAACGCACCTGCGGATCCACACAAAGGACAAGCCATTCGAatgcacagtttgcaagaaGAGTTTCAGGACAAGTAGAGATCTTAGAACGCACCAACGGACCCACAtcggggagaagccttacgAGTGCCCAGTATGCAAGAAAAAAATCACTGCAAGTTCGAGTTTGAGAGAGCACCTTCGCatccacactggggagaaccctttcgagtgcacagtttgcaagaaGGGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTACggacccacaccggggagaagcctttcgagtgcgcaGTTTGCAAGAAGAGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTTcggatccacaccggggagaagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTTAGAAGGCACCTACGGACCCACACCGAGGAGAAGCCTtacgagtgcacagtttgcaagaaCAAATTCACTGCAAGTTCGAGTTTGAGAGAGCACCTTCGCatccacactggggagaagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGAAAAGTGGAAATCTTAGATCGCACCTACGGACCCATACCGGGGAGAACCCTTTCGAGTGCACCGTTTGTAAGAAGAGTTTCAGTGAATCCGGAAACCTCAGAAGGCATCTCAGAACCCACATTAGAGTTCGTGGCACACTTCGGGCCGTGAAACGCAGCCGCAGTGTTCCCAGCGGTCCCTCGTCGGCTTGCCCAAGGCGGACTTCCCGAAGAGTTCGTGGCGCACTTCGGGCCGTGGAACGCAACCGCAGTTTTCCCAGCGGTCCCTCGTCGTCGGCTTGCCCAAGGCGGACTTCCCGAAGAATAGGACCCGAGTCGGTGTGCACCGTTACTCTCAGCATTTTGAGGTCTTCGCCTGCACCTAAGGCCCTCCCTGCCAGGCACATCATGGCCCTTGAGAGtgcactgtgcggcgaggtggcggcagcgtcagcggcgccgcgtgctccACGGGGAAAGCGTGGAGGGCAGCAGGCGCTCCACTGTGCAGTCTGCGAGAAGGAGTTCCGATTCAAGAGTGGCCTCCAGGCGCACTTGcggatccacaccggggagaagcctttcgagtgcacgtTCTGCGAGGAGAAGTTTGCTCAAAAGAGTCACCTAACAAGGCACCTTCGCACCCACACCAAGGTGAAGCCGTTTGAGTGCGTAGTTTGCCAGAAGAAGTTCTCTCAAAGTGGGAGTCTAAAATTGCACCTTCggacccacaccggggagaagcctttcgagtgcgcaGTTTGCAAGAAGAGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTACggacccacaccggggagaaacCTTTCGAGTGCGCAGTTTGCAAGAACAAATTCACTGCAAGTTCGAGTTTGAGAGAGCACCTTCGCatccacactggggagaagcctttcgagtgcaccgTTTGCAAGAAGAGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTACggacccacaccggggagaaacCTTTCGAGTGCGCAGTTTGCAAGAACAAATTCACTGCAAGTTCGAGTTTGAGAGAGCACCTTCGCatccacactggggagaagcctttcgagtgcaccgTTTGCAAGAAGAGTTTCAGGACAAGTGGAGATCTTAGAACGCACCTAcgcacccacaccggggagaaacctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTGAGAACGCACCTACGGACCCACACCGGgaagaagcctttcgagtgcaccgTTTGTAAGAAGAGTTTCAGTGCATCCGGAAACCTCAGAAAGCATCTCAGAACCCTCACTAGgtag
- Protein Sequence
- MALESAQCGEEAASSAAPRAPRGKRGGQQALHCAVCEKEFRFNSGLQAHLRIHTGEKPFECTFCEEKFAQKSHLTTHLRTHTKVKPFECVVCQKKFSQSGNLKLHLQTHSEEKPFECAVCLKKFSVSANLRTHLRIHTKDKPFECTVCKKSFRTSRDLRTHQRTHIGEKPYECPVCKKKITASSSLREHLRIHTGENPFECTVCKKGFRKSGDLRTHLRTHTGEKPFECAVCKKSFRKSGDLRTHLRIHTGEKPFECTVCKKSFRTSGDLRRHLRTHTEEKPYECTVCKNKFTASSSLREHLRIHTGEKPFECTVCKKSFRKSGNLRSHLRTHTGENPFECTVCKKSFSESGNLRRHLRTHIRVRGTLRAVKRSRSVPSGPSSACPRRTSRRVRGALRAVERNRSFPSGPSSSACPRRTSRRIGPESVCTVTLSILRSSPAPKALPARHIMALESALCGEVAAASAAPRAPRGKRGGQQALHCAVCEKEFRFKSGLQAHLRIHTGEKPFECTFCEEKFAQKSHLTRHLRTHTKVKPFECVVCQKKFSQSGSLKLHLRTHTGEKPFECAVCKKSFRKSGDLRTHLRTHTGEKPFECAVCKNKFTASSSLREHLRIHTGEKPFECTVCKKSFRKSGDLRTHLRTHTGEKPFECAVCKNKFTASSSLREHLRIHTGEKPFECTVCKKSFRTSGDLRTHLRTHTGEKPFECTVCKKSFRTSGDLRTHLRTHTGKKPFECTVCKKSFSASGNLRKHLRTLTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435202;
- 90% Identity
- iTF_01435202;
- 80% Identity
- iTF_01435202;