Tpal013960.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
ZBTB40
Assembly
GCA_012932325.1
Location
NW:5231263-5237504[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0006 0.019 15.1 0.1 1 23 288 310 288 310 0.96
2 12 5.1e-05 0.0016 18.5 1.6 1 23 318 340 318 340 0.99
3 12 9.8e-06 0.00031 20.7 1.8 1 23 347 369 347 369 0.98
4 12 7.4e-05 0.0024 17.9 0.4 5 23 378 396 376 396 0.96
5 12 7.1e-06 0.00023 21.1 1.4 1 23 403 425 403 425 0.98
6 12 4.8e-05 0.0015 18.5 0.0 1 23 431 453 431 453 0.96
7 12 3.2e-05 0.001 19.1 0.2 1 23 459 481 459 481 0.98
8 12 1.3e-06 4e-05 23.5 1.2 1 23 487 510 487 510 0.96
9 12 2.4e-05 0.00075 19.5 1.4 1 23 516 539 516 539 0.96
10 12 1.4e-05 0.00045 20.2 3.3 1 23 545 567 545 567 0.99
11 12 0.00011 0.0034 17.4 1.5 1 23 573 595 573 595 0.97
12 12 0.0011 0.034 14.3 0.1 1 23 601 625 601 625 0.92

Sequence Information

Coding Sequence
ATGACGGCTGATGTCGAGAAGAGCCCACATTGCTTGCTGTGTAACAGTAGGGTGGGAGTTTCCACTAGAAACAGCTGCCCCATCTTTCAGCAAAATGTGACATCATCAGAGAGAACTGTTGCAGCCACCATCGGTTTAGTCCTTAATCAGGAACTGTCTCAAGAAACAGTGCACAGCGATGTGGTTTGCAAAAAGTGCTATAAACTGTTAAATGAATTCGATGAACTGGAAGAAAGGCTTGTTGAGCTACGGATGGAATTGTCCTCCAACTACAATCGTACTCTAGCCAAGCGAAATGGAGACCTAGTGGAAGAAGAAGCTGAGGATGAGGAGGCCTTAGATGAGTCAGGTTGGGCTGCTGACGATCGAGAATACAAACCTCAAATAAAACTACCATTGGAGGATGGTAATGCACAACCATCTGCTAGAGGTCGTAAGAAAACCATGGTGAAGCGGACTATTAAAGTAGAGCATGTTGATGGTGAACAAAAGGAGAATGAAGGTGAGGGCACAATTGTTGAAGAGTTTGAAATTGAATATGACGCCAATGATGTCCCTGAAGCTGAAGAGGGAGAAGGTGCAGAAGGAGAAACTGCTGAAGATGGACCATCAAAGGTTGAAGATGGTCAAGAGTCTCCTAAAAAAGTGTCATATCCTCAAGTcaaaagaaggaggagaaTGGCAAAGAAACGAGGCCGCAAACCTGCCATTAAGGTGAAACCAGAGGAAACGAGACTTGTTGAAGAAATGGTGGCACGTGAAGAGGGTCAATATGTGTGCTTGGTGTGCACTGATCAGAAGGTTACAGGAGATGACAAAACTATGACTCTGCACATGCGGGACGTGCATGAGTTCAGGCTATACGTGTGTGACATTTGTGGTGCAGTATTCCGTAAACGCACAGAGATGTCTACTCACTTGGATGAACATGTGGCTAATGAACAAGGTGATTTCCAATGTGAGGTGTGCAACCGTATTTTCAGTAATTTGCGTCTTTTCCGCATCCACAAGAGAATGCATTATCCTACATCCAAACTGCACACCTGTGATACATGTGGGAAACGCTACAGTTCTCGGAATCTGTTGGAAGAACACATCAATACTCATACAGGAGCCAGGCCATATGTGTGTCAATGTGGCAAAAGTTTTGCTTCTAAATACACTTACAAGGCTCATATTAGAATTCATGAGCAGCGTCCTCGCCCCTTTGCTTGCACTGAATGTGATAAAACTTTCCTGACCTCTCAAAATCTGACACAGCATCTTCGAACACATTCAGAAGTCAAAAACTTCATTTGCAAGCAATGTGGTAAAGGATTTGGCACTGCCCGAAACTTGGAGGTGCATGCAATCGTCCATACAGGTTTCAAGCCATTTATTTGTAGGATGTGTGGCAAAGCATTTGCACGAAAGGCTGAAATTCGTGACCATGAGCGTACTCACACTGGTGAGAAACCATACCAATGTGAGTTCTGTGGTGCCACATTCAGCCAACGTAGTAACTTGCAGTCTCACAAACGAGCTACTCACTACGATGACAAGCGCTACAAGTGTACTGAATGCACAAAGGCCTTCAAGAGGCGCCGTTTGTTGGACTATCACATGAAAGCTGCCCATACTGGAGAAAGACCTTATAAGTGCAACACATGTGATGCTACTTTTGTGTATCCTGAACACTTCAAGAAGCATCGTCGTATTCATACTGGTGAAAAGCCGTATCACTGTGAGGTGTGTGGTAAAGCATTTAACAGCCGTGACAACCGTAATGCTCACCGCTTTGTCCACAGTGACAAAAAGCCATACGAGTGTTTGGTTTGTGGAATGGGCTTCATGCGGAAACCTTTACTCTACAACCACATGCAATCTCAGGGACATCTGAATGACACCATTGTGGTTAACCAGCCAAGACTAACCACAGAGGAGGATATCATAGCAGAAGGTGGTGAAGAGATGGAGATGACTATTGTTGGTGAAGATGAACTTCAAGGAGGGCAACCTGTGTACATAGCAGAACTGAAAGAACATGTAATCATTCAAGATGGTGAAGATGGACAAGAGCGCATTGTGTTGAGAGATGGTCAAGATCTGCGTGAACTGGCTGAGCACCACATTGTGACAGAAGGGGGAGTAGGCCATCTCATCATTGACGGACAGCAAGTTCAATTTGCGGATGCCTCTGATCTTGCTGGTATTGAGCAAGTTGAGGGTGAAGGCGGGGAGACCTACACTATTGGAGGACACCGTGCACTCGTCGTACCAGCAACACCACATCTTGCAAACTATGGAGATGTTGTGGAACATGATGGAGAGGGAGAAATCATTACAGGTCTTCAAGACGGTGAAACACAAGTGGTCCAAGGCGAATCGGGACCTGTGCATCTTGTTCAGATTAAAATACCATCGGGAACTGTTGGGGATAAGACATGGTTGAACATTGTACCATCATAA
Protein Sequence
MTADVEKSPHCLLCNSRVGVSTRNSCPIFQQNVTSSERTVAATIGLVLNQELSQETVHSDVVCKKCYKLLNEFDELEERLVELRMELSSNYNRTLAKRNGDLVEEEAEDEEALDESGWAADDREYKPQIKLPLEDGNAQPSARGRKKTMVKRTIKVEHVDGEQKENEGEGTIVEEFEIEYDANDVPEAEEGEGAEGETAEDGPSKVEDGQESPKKVSYPQVKRRRRMAKKRGRKPAIKVKPEETRLVEEMVAREEGQYVCLVCTDQKVTGDDKTMTLHMRDVHEFRLYVCDICGAVFRKRTEMSTHLDEHVANEQGDFQCEVCNRIFSNLRLFRIHKRMHYPTSKLHTCDTCGKRYSSRNLLEEHINTHTGARPYVCQCGKSFASKYTYKAHIRIHEQRPRPFACTECDKTFLTSQNLTQHLRTHSEVKNFICKQCGKGFGTARNLEVHAIVHTGFKPFICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTECTKAFKRRRLLDYHMKAAHTGERPYKCNTCDATFVYPEHFKKHRRIHTGEKPYHCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQSQGHLNDTIVVNQPRLTTEEDIIAEGGEEMEMTIVGEDELQGGQPVYIAELKEHVIIQDGEDGQERIVLRDGQDLRELAEHHIVTEGGVGHLIIDGQQVQFADASDLAGIEQVEGEGGETYTIGGHRALVVPATPHLANYGDVVEHDGEGEIITGLQDGETQVVQGESGPVHLVQIKIPSGTVGDKTWLNIVPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00732034; iTF_00733369;
90% Identity
-
80% Identity
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