Focc004439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
ZBTB40
Assembly
None
Location
ML763289.1:14743-20492[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00083 0.045 14.1 0.1 1 23 294 316 294 316 0.95
2 12 3.5e-05 0.0019 18.4 1.6 1 23 324 346 324 346 0.99
3 12 6.5e-06 0.00035 20.7 1.8 1 23 353 375 353 375 0.98
4 12 0.00037 0.02 15.2 0.4 5 23 384 402 382 402 0.96
5 12 3.6e-06 0.00019 21.6 1.3 1 23 409 431 409 431 0.98
6 12 3.3e-05 0.0018 18.5 0.0 1 23 437 459 437 459 0.96
7 12 2.2e-05 0.0012 19.0 0.2 1 23 465 487 465 487 0.98
8 12 8.8e-07 4.8e-05 23.5 1.2 1 23 493 516 493 516 0.96
9 12 1.6e-05 0.00088 19.5 1.4 1 23 522 545 522 545 0.96
10 12 9.9e-06 0.00054 20.2 3.3 1 23 551 573 551 573 0.99
11 12 7.3e-05 0.004 17.4 1.5 1 23 579 601 579 601 0.97
12 12 0.00073 0.04 14.3 0.1 1 23 607 631 607 631 0.92

Sequence Information

Coding Sequence
ATGACGGCTGACACAGAAAATAAGAGCATGCACTGCCTGCTGTGTAATAGCAGAGTTGGTGTGTCAACTAGGAACAGTTGTCCAATTTTCCAGCAAAATGTCACAACATCAGATCGAACTGTTGCTGCTACGCTTGGGCTTGTACTTAACCAGGAATTGACCGAAGAAACTGTACACAGTGATGTGGTGTGCAAGAAATGCCTTAAGCTGTTGAATGAAGTAGACTCACTAGAGGAAAGACTAGCCGAATTACGCATGGAACTCTCCACTAATTATAATCGAACTTTAGCAAAACGTAATGGTGAAGAAGCTGAAGAAGATCTTGATAATGATGATGCTTTAGGTGAAGCTGGCTGGGCTCCTGATGACAGGGAATATAAGCCTCAAATTAAGCTACCTCTTGAAGATGGCAATGCTCAACCATCTGGCAGAGGCCGCAAGAAAACTATTGTCAAGCGGATAATCAAACTAGAACATGCAGATGGTGAACAAAAGGAGAATGAAGGAGAGGGAACCATTGTAGAGGAGTTTGAAATTGAGTATGATGCTGCTGACGTACCTGAGGGTGCAGAGGGTGCAAAGGAGGGAGAAGACGCAGAAAATTCAGGGGAGGGATCTGGAGTGGTACCCAAGACCGAGGATGGACAAGAACAACCAAAGAAAGTTTCTTACCCTCAAGTTAAGAGAAGAAGGAGAATGCCCAAGAAGCGAGGCCGTAAGCCAGCAATTAAAGTTAAACCCGAAGAGACAAGACTTGTTGAGGAAATGGTTGCTCGAGAAGACAATCAATATGTTTGCTTGGTTTGCACTGATCAAAAGGTCATGGGTGATGACAAGACTATGACAGCTCACATGCGTGATGTTCATGAGTTCAGGCTGTATGTTTGTGACATTTGTGGTGCAGTATTTAGGAAGCGCACAGAAATGTCTCTTCATTTGGATGAACATGTGGCTAATGAGCAAGGTGATTTCCAGTGTGAAGTGTGCAATCGCATATTTAGCAACCTAAGACTTTTCCGTATACACAAAAGAATGCATTATCCATCCACCAAACTTCATACATGTGAAACATGTGGAAAGCGTTACAGTTCTCGCAATTTACTGGAGGAGCATATTAATACCCACACTGGAGCAAGACCCTATGTATGCCAATGTGGTAAAAGTTTTGCCTCAAAGTACACTTACAAGGCTCACGTCAAGATCCATGAATCACGTCCACGCCCCTATGCATGCACTGAATGTGACAAAACATTCCTAACTTCCCAGAACCTTACTCAGCATCTCCGAACTCACTCAGAAGTTAAGAATTTCATATGTAAACAGTGTGGAAAAGGATTTGGGACTGCTCGTAATTTGGAGGTACATGCAATTGTCCATACTGGATTTAAGCCATTTATCTGCAGGATGTGTGGAAAAGCATTTGCTCGAAAGGCTGAAATTCGAGATCATGaacgaacacacacaggagaaaaaccttACCAGTGTGAGTTCTGCGGTGCTACCTTCAGTCAACGTAGTAATTTGCAGTCTCACAAACGAGCTACGCATTATGATGACAAGCGTTACAAGTGTACTGAGTGCACCAAAGCATTCAAGAGACGAAGGCTTCTAGATTACCACATGAAAGCAGCTCATACTGGCGAGAGACCATACAAGTGCAACACCTGTGATGCCACTTTTGTGTATCCTGAGCACTTCAAAAAACATCGCCGTATTCATACTGGTGAAAAACCTTACCATTGTGAGgTGTGTGGAAAAGCATTCAACAGCCGTGACAATCGTAATGCTCATAGATTTGTGCACAGTGACAAGAAACCATATGAGTGTCTTGTATGTGGAATGGGCTTTATGCGGAAACCTCTCCTTTACAATCATATGCAATCTCAGGGTCATTTGAATGACACTATTGTTGTCAACCAGCCCAGACTGACAACAGAAGAAGACATTATGGCAGAAGGAACTGAGGAAATGGAAATGACAATTGTTGGTGAAGACGAGTTGCAAGGAGGACACCCTGTTTACATTGCTGAACTGAAAGATCATGTTATTATTCAAGAGGGTGAAGATGGTTCTGAACGAATTGTGCTAAGAGATGGTCAGGATCTGAGAGAACTGACAGAACACCACATAGTAACTGAGGGTGGAGTTGGTCACCTGATTATTGATGGGCAGCAAGTCCAGTTTGCTGACGCCTCAGACCTTGCTGGAATTGAACATGTTGAAAACGAGGCTGGGGAAACTTTCACCATTGGTGGTCATCGCACTCTGGTGGTCCCAGCTACCCCACATATGGCAAACTATGCAGATGTTGTGGAACaagatggagatggagaggTGATAACTGCAACTATTCCTGAAGGAGAGGGGCAAACCATTGATGGGCAATCAGGACCTGTTCACCTTGTTCAAATCAAGATTCCAACTGGCAATGAGAAAGCTTGGTTAAATATTGTTCCATCTTCATAA
Protein Sequence
MTADTENKSMHCLLCNSRVGVSTRNSCPIFQQNVTTSDRTVAATLGLVLNQELTEETVHSDVVCKKCLKLLNEVDSLEERLAELRMELSTNYNRTLAKRNGEEAEEDLDNDDALGEAGWAPDDREYKPQIKLPLEDGNAQPSGRGRKKTIVKRIIKLEHADGEQKENEGEGTIVEEFEIEYDAADVPEGAEGAKEGEDAENSGEGSGVVPKTEDGQEQPKKVSYPQVKRRRRMPKKRGRKPAIKVKPEETRLVEEMVAREDNQYVCLVCTDQKVMGDDKTMTAHMRDVHEFRLYVCDICGAVFRKRTEMSLHLDEHVANEQGDFQCEVCNRIFSNLRLFRIHKRMHYPSTKLHTCETCGKRYSSRNLLEEHINTHTGARPYVCQCGKSFASKYTYKAHVKIHESRPRPYACTECDKTFLTSQNLTQHLRTHSEVKNFICKQCGKGFGTARNLEVHAIVHTGFKPFICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTECTKAFKRRRLLDYHMKAAHTGERPYKCNTCDATFVYPEHFKKHRRIHTGEKPYHCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQSQGHLNDTIVVNQPRLTTEEDIMAEGTEEMEMTIVGEDELQGGHPVYIAELKDHVIIQEGEDGSERIVLRDGQDLRELTEHHIVTEGGVGHLIIDGQQVQFADASDLAGIEHVENEAGETFTIGGHRTLVVPATPHMANYADVVEQDGDGEVITATIPEGEGQTIDGQSGPVHLVQIKIPTGNEKAWLNIVPSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435269;
90% Identity
iTF_00732034;
80% Identity
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