Tpal013568.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:3495852-3498513[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.3 2.3e+02 2.2 3.9 2 23 65 86 64 86 0.95
2 26 2.1e-06 6.8e-05 22.8 0.7 1 23 91 113 91 113 0.96
3 26 0.016 0.51 10.6 2.5 1 20 119 138 119 141 0.92
4 26 0.016 0.51 10.6 0.0 4 22 150 168 150 168 0.95
5 26 5.4e-06 0.00017 21.5 2.0 1 23 175 197 175 197 0.99
6 26 3e-07 9.5e-06 25.5 0.8 1 23 203 225 203 225 0.99
7 26 1.3e-06 4e-05 23.5 1.0 1 23 231 253 231 253 0.99
8 26 2.9e-06 9.4e-05 22.3 0.5 1 23 259 281 259 281 0.99
9 26 4.4e-07 1.4e-05 24.9 1.0 1 23 287 309 287 309 0.99
10 26 2.8e-06 9e-05 22.4 1.1 1 23 315 337 315 337 0.99
11 26 1.1e-05 0.00036 20.5 1.2 1 23 343 365 343 365 0.99
12 26 2.9e-05 0.00092 19.2 0.2 1 23 371 393 371 393 0.99
13 26 1.8e-06 5.7e-05 23.0 1.0 1 23 399 421 399 421 0.99
14 26 3.7e-05 0.0012 18.9 0.2 1 23 427 449 427 449 0.99
15 26 1.5e-06 4.8e-05 23.2 1.3 1 23 455 477 455 477 0.99
16 26 0.0079 0.25 11.5 1.8 1 23 483 505 483 505 0.99
17 26 0.062 2 8.7 1.7 1 23 511 532 511 532 0.81
18 26 0.0016 0.05 13.8 0.1 5 23 597 615 595 615 0.96
19 26 5.9e-06 0.00019 21.4 0.4 1 23 621 643 621 643 0.99
20 26 5.3e-06 0.00017 21.5 0.6 1 23 649 671 649 671 0.99
21 26 5.9e-07 1.9e-05 24.5 1.2 1 23 677 699 677 699 0.99
22 26 0.00023 0.0072 16.4 0.9 1 23 705 727 705 727 0.99
23 26 1.4e-05 0.00044 20.2 0.4 1 23 733 755 733 755 0.99
24 26 4e-07 1.3e-05 25.1 1.3 1 23 761 783 761 783 0.99
25 26 2.6e-05 0.00082 19.4 1.8 1 23 789 811 789 811 0.98
26 26 0.00012 0.0038 17.3 0.9 1 23 817 839 817 839 0.99

Sequence Information

Coding Sequence
ATGAATCTAGAACCTCTTCAAAGTACCTATATTCTGCTGAAGTCTCCTCAGTGTGTTTTTAGCAATGATTTGTTAGAAAACGTGACATCCAAGAAACAGCACCATCTTGAGGGCAAGCGTTTCGATGAGCGCATTGCTCCAGGAAATATTATGAAAGAGCACCCGAAAACCCATACTGAAGAGAACCCCTGCGAATGCGAAGTTTGTAATTTTAGGCTCAAGAGAGAAGATACTCACCGAATTCATGTTCAAACTCACACAGAGAAGCCCTATTTGTGCACGGTCTGTGGTAAGAGATTCTCTAGAAAGGACCCTCTCATGGATCACCTCAGACGACACATTGGGGAAAAGGCTTTCGAATGCAAATTTTGCAAAGAGGGATTTATAACAGCAACTTCCTTCAGACATCATCTTTGGACTCATTCAGATGAGAAGTCTTATAAAAGACCAGATTGCAATGAGGCATTTCCAACAGGAAGCAGTCTTAAAACCCACCTTCGAACGCAAACAGGGGAAATGCTCTATAAGTGCTTACTTTGCAATAAGACATTTTCATCAGGAAGTAAGCTGCGAGATCACCTTCGAACGcatacaggggagaagccttatGAGTGCGAAGTTTGCAACAAGTCATTTTCAACAGGAAGTAAGCTGCGAGATCACATTCGAACGCATACAGGGGAAATGCTCTATAAGTGCTTAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACATTCGAACGCACACAGGGGAAaagccctatgagtgcgaagTTTGCAATAAGGCATTTTCAAGAGGAAGTAGGCTGCGAGAACACCTTCGAACGCACACAGGGGAAAAGCCCTTTAAGTGCGAAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACATTCGAACGCACACAGGGGAAAAGCCCTTTAAGTGCGAAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAGGCTGCGAGAACACCTTCGAACGcacacaggggagaagccCTTCAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCAAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACCTTCTAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGCAGCAAGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCTAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGCAGCAAGGCATTTTCAACACGATTTGACCTAGGGAAACATCTTCGAACGCACACAGGGAAAAAGCCCTATGTGTGCGAAGTTTGCCGCAATTCATTTTCAACAGGAAGTGGGCTGCGATGTCACCTTCGAACGcacacaggggagaagccCTTTAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGAAGTAGCTGCGAAACACCTTCGAACGcacacaggggagaagccTATAAGTGCAAAGTTTGCAGCAAGGCATTTTCATCAGGAAGTGACCTGCGACGTCACCTTCAAACGcacacaggggagaagccCTTTAAGTGTGAAGTTTGTAGTAAGGCACTTACATCAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACGGGGGAGAAGCCCTATAAGTGTGGTTTGCAGCAAGGCATTTGCAACAGGAAGTGACCTAAGAATACACCTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACCTTCGAACGcacacaggggagaagccCTTTAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGCAAGTGTGCTAGGAAAACACCTTCGAACGCACACAGGGGAGAAGCTCTATAAGTGCAAAGTTTGCAGCAAGGCATTTTCATCAGGAAGTGACCTGCGACGTCACCTTCAAACGcacacaggggagaagccCTTTAAGTGTGAAGTTTGTAGTAAGGCACTTACATCAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACGGGGGAGAAGCCCTATAAGTGTGGTGTTTGCAGCAAGGCATTTGCAACAGGAAGTGACCTAAGAATACACTTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAACAAGTCATTTTCAACAGGAAGTAAGCTGCGACGTCACCTTCAAACGcacacaggggagaagccCCATAAGTGTGAAGTTTGCAGCAAGGCATTTGCAACAGGAAGTGGCCTAAGAAGACACTTTCGAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGTAGTAAGGCACTTACAACAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACAGGTCAGAAGCCCTAG
Protein Sequence
MNLEPLQSTYILLKSPQCVFSNDLLENVTSKKQHHLEGKRFDERIAPGNIMKEHPKTHTEENPCECEVCNFRLKREDTHRIHVQTHTEKPYLCTVCGKRFSRKDPLMDHLRRHIGEKAFECKFCKEGFITATSFRHHLWTHSDEKSYKRPDCNEAFPTGSSLKTHLRTQTGEMLYKCLLCNKTFSSGSKLRDHLRTHTGEKPYECEVCNKSFSTGSKLRDHIRTHTGEMLYKCLVCNKAFSRGSKLRDHIRTHTGEKPYECEVCNKAFSRGSRLREHLRTHTGEKPFKCEVCNKAFSRGSKLRDHIRTHTGEKPFKCEVCNKAFSRGSRLREHLRTHTGEKPFKCQVCSKAFSTGSKLRDHLQTHTGEKPYECEVCNMAFSRGSKLRDHLLTHTGEKPYKCEVCSKAFSTGSKLRDHLRTHTGEKPYECEVCNMAFSTGSKLRDHLLTHTGEKPYKCEVCSKAFSTRFDLGKHLRTHTGKKPYVCEVCRNSFSTGSGLRCHLRTHTGEKPFKCQVCSKAFSTEVAAKHLRTHTGEKPISAKFAARHFHQEVTCDVTFKRTQGRSPLSVKFVVRHLHQELSCEITFERTRGRSPISVVCSKAFATGSDLRIHLRTHTGEKPYECEVCNMAFSRGSKLRDHLRTHTGEKPFKCQVCSKAFSTASVLGKHLRTHTGEKLYKCKVCSKAFSSGSDLRRHLQTHTGEKPFKCEVCSKALTSGTKLRNHLRTHTGEKPYKCGVCSKAFATGSDLRIHFRTHTGEKPYECEVCNKSFSTGSKLRRHLQTHTGEKPHKCEVCSKAFATGSGLRRHFRTHTGEKPYKCEVCSKALTTGTKLRNHLRTHTGQKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435170;
90% Identity
iTF_01435170;
80% Identity
iTF_01435170;