Tpal013568.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:3495852-3498513[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 2.6 1.1e+03 -0.6 0.9 9 32 57 78 51 86 0.75 2 25 0.0051 2.2 8.0 0.2 6 41 82 112 81 115 0.78 3 25 0.22 94 2.8 1.6 10 41 113 140 108 142 0.77 4 25 4.6 2e+03 -1.4 0.0 33 42 160 169 152 170 0.83 5 25 0.002 0.84 9.4 2.9 17 41 175 196 160 198 0.87 6 25 0.037 16 5.3 0.5 17 41 203 224 196 226 0.87 7 25 0.0023 0.98 9.2 0.6 18 41 232 252 227 254 0.90 8 25 0.00017 0.074 12.8 1.5 6 41 249 280 244 282 0.81 9 25 0.002 0.85 9.4 0.5 17 41 287 308 281 310 0.88 10 25 0.00016 0.069 12.8 0.7 17 41 315 336 309 338 0.90 11 25 0.026 11 5.8 0.2 17 41 343 364 337 366 0.88 12 25 0.1 43 3.9 0.3 15 39 369 390 360 394 0.81 13 25 0.021 8.9 6.1 0.3 17 41 399 420 391 422 0.88 14 25 1.2 5.2e+02 0.4 0.2 17 39 427 446 421 450 0.83 15 25 1.4 6.2e+02 0.2 1.2 14 29 452 467 440 480 0.71 16 25 0.14 61 3.4 3.2 16 41 482 504 472 506 0.83 17 25 0.28 1.2e+02 2.5 0.2 17 38 511 532 505 549 0.81 18 25 0.018 7.6 6.3 0.4 15 41 619 642 606 644 0.86 19 25 0.4 1.7e+02 2.0 0.4 17 41 649 670 643 671 0.80 20 25 0.00078 0.33 10.7 1.7 13 41 673 698 666 700 0.84 21 25 0.0089 3.8 7.3 1.2 17 41 705 726 698 728 0.87 22 25 2.1 8.8e+02 -0.3 0.8 17 29 733 745 726 755 0.77 23 25 0.00053 0.23 11.2 0.7 6 41 751 782 746 783 0.90 24 25 0.03 13 5.6 0.5 18 41 790 810 783 812 0.89 25 25 0.0044 1.9 8.2 2.6 5 41 806 838 802 839 0.90
Sequence Information
- Coding Sequence
- ATGAATCTAGAACCTCTTCAAAGTACCTATATTCTGCTGAAGTCTCCTCAGTGTGTTTTTAGCAATGATTTGTTAGAAAACGTGACATCCAAGAAACAGCACCATCTTGAGGGCAAGCGTTTCGATGAGCGCATTGCTCCAGGAAATATTATGAAAGAGCACCCGAAAACCCATACTGAAGAGAACCCCTGCGAATGCGAAGTTTGTAATTTTAGGCTCAAGAGAGAAGATACTCACCGAATTCATGTTCAAACTCACACAGAGAAGCCCTATTTGTGCACGGTCTGTGGTAAGAGATTCTCTAGAAAGGACCCTCTCATGGATCACCTCAGACGACACATTGGGGAAAAGGCTTTCGAATGCAAATTTTGCAAAGAGGGATTTATAACAGCAACTTCCTTCAGACATCATCTTTGGACTCATTCAGATGAGAAGTCTTATAAAAGACCAGATTGCAATGAGGCATTTCCAACAGGAAGCAGTCTTAAAACCCACCTTCGAACGCAAACAGGGGAAATGCTCTATAAGTGCTTACTTTGCAATAAGACATTTTCATCAGGAAGTAAGCTGCGAGATCACCTTCGAACGcatacaggggagaagccttatGAGTGCGAAGTTTGCAACAAGTCATTTTCAACAGGAAGTAAGCTGCGAGATCACATTCGAACGCATACAGGGGAAATGCTCTATAAGTGCTTAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACATTCGAACGCACACAGGGGAAaagccctatgagtgcgaagTTTGCAATAAGGCATTTTCAAGAGGAAGTAGGCTGCGAGAACACCTTCGAACGCACACAGGGGAAAAGCCCTTTAAGTGCGAAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACATTCGAACGCACACAGGGGAAAAGCCCTTTAAGTGCGAAGTTTGCAATAAGGCATTTTCAAGAGGAAGTAGGCTGCGAGAACACCTTCGAACGcacacaggggagaagccCTTCAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCAAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACCTTCTAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGCAGCAAGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAACAGGAAGTAAGCTGCGAGATCACCTTCTAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGCAGCAAGGCATTTTCAACACGATTTGACCTAGGGAAACATCTTCGAACGCACACAGGGAAAAAGCCCTATGTGTGCGAAGTTTGCCGCAATTCATTTTCAACAGGAAGTGGGCTGCGATGTCACCTTCGAACGcacacaggggagaagccCTTTAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGAAGTAGCTGCGAAACACCTTCGAACGcacacaggggagaagccTATAAGTGCAAAGTTTGCAGCAAGGCATTTTCATCAGGAAGTGACCTGCGACGTCACCTTCAAACGcacacaggggagaagccCTTTAAGTGTGAAGTTTGTAGTAAGGCACTTACATCAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACGGGGGAGAAGCCCTATAAGTGTGGTTTGCAGCAAGGCATTTGCAACAGGAAGTGACCTAAGAATACACCTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAATATGGCATTTTCAAGAGGAAGTAAGCTGCGAGATCACCTTCGAACGcacacaggggagaagccCTTTAAGTGCCAAGTTTGCAGCAAGGCATTTTCAACAGCAAGTGTGCTAGGAAAACACCTTCGAACGCACACAGGGGAGAAGCTCTATAAGTGCAAAGTTTGCAGCAAGGCATTTTCATCAGGAAGTGACCTGCGACGTCACCTTCAAACGcacacaggggagaagccCTTTAAGTGTGAAGTTTGTAGTAAGGCACTTACATCAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACGGGGGAGAAGCCCTATAAGTGTGGTGTTTGCAGCAAGGCATTTGCAACAGGAAGTGACCTAAGAATACACTTTCGAACGcacacaggggagaagccttatGAGTGCGAAGTTTGCAACAAGTCATTTTCAACAGGAAGTAAGCTGCGACGTCACCTTCAAACGcacacaggggagaagccCCATAAGTGTGAAGTTTGCAGCAAGGCATTTGCAACAGGAAGTGGCCTAAGAAGACACTTTCGAACGcacacaggggagaagccCTATAAGTGCGAAGTTTGTAGTAAGGCACTTACAACAGGAACTAAGCTGCGAAATCACCTTCGAACGCACACAGGTCAGAAGCCCTAG
- Protein Sequence
- MNLEPLQSTYILLKSPQCVFSNDLLENVTSKKQHHLEGKRFDERIAPGNIMKEHPKTHTEENPCECEVCNFRLKREDTHRIHVQTHTEKPYLCTVCGKRFSRKDPLMDHLRRHIGEKAFECKFCKEGFITATSFRHHLWTHSDEKSYKRPDCNEAFPTGSSLKTHLRTQTGEMLYKCLLCNKTFSSGSKLRDHLRTHTGEKPYECEVCNKSFSTGSKLRDHIRTHTGEMLYKCLVCNKAFSRGSKLRDHIRTHTGEKPYECEVCNKAFSRGSRLREHLRTHTGEKPFKCEVCNKAFSRGSKLRDHIRTHTGEKPFKCEVCNKAFSRGSRLREHLRTHTGEKPFKCQVCSKAFSTGSKLRDHLQTHTGEKPYECEVCNMAFSRGSKLRDHLLTHTGEKPYKCEVCSKAFSTGSKLRDHLRTHTGEKPYECEVCNMAFSTGSKLRDHLLTHTGEKPYKCEVCSKAFSTRFDLGKHLRTHTGKKPYVCEVCRNSFSTGSGLRCHLRTHTGEKPFKCQVCSKAFSTEVAAKHLRTHTGEKPISAKFAARHFHQEVTCDVTFKRTQGRSPLSVKFVVRHLHQELSCEITFERTRGRSPISVVCSKAFATGSDLRIHLRTHTGEKPYECEVCNMAFSRGSKLRDHLRTHTGEKPFKCQVCSKAFSTASVLGKHLRTHTGEKLYKCKVCSKAFSSGSDLRRHLQTHTGEKPFKCEVCSKALTSGTKLRNHLRTHTGEKPYKCGVCSKAFATGSDLRIHFRTHTGEKPYECEVCNKSFSTGSKLRRHLQTHTGEKPHKCEVCSKAFATGSGLRRHFRTHTGEKPYKCEVCSKALTTGTKLRNHLRTHTGQKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435206;
- 90% Identity
- iTF_01435206;
- 80% Identity
- iTF_01435206;