Tpal011937.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- egg
- Assembly
- GCA_012932325.1
- Location
- NW:10123057-10129592[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 4.7e+03 -3.0 0.0 47 58 259 270 257 280 0.82 2 2 2e-13 4.8e-10 38.6 0.1 5 70 888 946 884 953 0.84
Sequence Information
- Coding Sequence
- ATGGAGGTAGATCTCACTGATGATGATTGTATCATGACAACTCCGATCCAGCTTGGTGCTTCGAAGACCCCAGCTTCGACACCCAAAACTCCTAAACCACCGAACAAACCCTCGGCGCCTCTAGAGATACTGGAAATTtcagatgatgatgatgatgatattATATTTGAGCCAGAGAAAGCAAATCCACCATCAAGCGGAGTTTCAACAAGCGCGTCAAAGCAAAGCTCTGATACATTGAAGAAGCTTCAAGTGTCTtcaaaaaatgacaaaacgGAAGATATTCAAGTATTCACTCCTATACCAATCAATGAAAGATTGCCATTACTCTCTTCCTTAGCTGAAAATGTACCTAAGAAACACTCAGCCAAGGATAAATCTGGTACAGATGATATTATTGAGGTATTTGATCTTCCCCCTTCAGTTTCAAATACAGAGAAAAGCAAACCATCTACTTCAGCTTCCGTAAGAACTCCAAGTAATTCAGTGGCAAAGAATCAGTCCACGCTTTTGCCCAAAGACAAAGCAACAGATCCTAAAGTGCCCAGTGGGCAGTCCAAAGGTTTTAAAGGTAGAAGCGACCCAACGGTAGATGATGTCATTGAGGTGGCAGAGTCTCCTCCGCGGAACCAAGAGGAGTTTTCGTCGCTCAACAAAGAGAAATCTGGGGCCAATAATGTTGCTGAGAAGAATGTTTCTATAGGTCAAGCTAAACAATCAAGAAATGTATCAACTTGTAGATATGTAGTAGATATAACAGATGAGGAAAAATCCAAGCAAGTCACCTGTTACCCTAAAAGAAATTCAGAAAATACGTGCTTGAATGTTGGCTGTAAATCTGGCGATGATCTGAAGAGTGCTCCCATGTTTGTGATAAGCTATTATGGCTGCAAGTTGAAGAAGGGAAAGTATGATGTTTGCGCAGAGTGTTTTCAAGCAGCAGTTGATCATCATGCGGAACTTGCCAATAGGTTGTGTCACCAGGAATCATTGTTTGCATATGAAAATTTTCGTATTAATGACATTCCTATTGTTGATCTCGAGTCTGATGAAGAAACCTCCGATAATGAGGAACCTCTTCCCTTTTCTGTACTCCTTGATCTAGAAAGGAACTTGGAAATGGCCTTGAATGAATCTTTTTCGAAGTACCACCTTGATTACCAGATCAAAGAAGCAACTGGAATGTTAACAGATAAAATGACTTCCTTAGAGTTGGAAGGGAAAAAGATTGATGACCAATATGATCAGCTCCAAAAAGATATTGATGAAATGCGTAAGAAAGTGTATGAAAAGCACAACGCTATCATAAGACAAGTACCAAGCCTTGATACAGCAACTCTTACACTGCCCTCAACAACACCTCAACAATTTGATACTTCCACCAAGTATCCTCAAAATATTCAAGAATATCAACCATTTATGCCGCACCGAGGAGTTGCAATGAAGAGAGTCACAAATCATTCACTGCATTCACCTCACAGGCCAATATCTCCAACAAGTCTTGATGGATGTAGTCAGGAAATTGTTGCTCTCAGGGAGGTTAATATTCCTCAAGCTCCATTACCTCCAATTGGACCCCTTGTGCGTCCCAAACCACGTACAGATGATATTGTATATGTCATGAAAATGAGTTTCTTTGGTGTTTGGCTCCGTGGACGTGTAATCGATGTTACCAACACATCTGCTGCAAATTATattacaAATACAGTGTATAAAGTAAAAATGGAACTTCAAGCAAATAAAAAACAGTTCTCAATTAAAACAGTGCAAGGAAAGCACATGGCTTATCCCAACCCAGCTTCTGTTCGTCTGGAGGTTGGTACTAGAGTTATAGCTGTTTTTCAAGATGATGAAAGTAACAACCAAAACAAAGGAGGATCCTACTATTCTGGCCTCATTGCTGAACCCCCAAAACCAAATAATCGATACAGATATCTAGTATTCTTTGATGATGGTTACGCACAGTATGTCCCTCATAATAAAATCTTAGTAGTCTGTGAGAGTTCTAGTAATGTTTGGGATGACATTCATCCTGACTCACGTGAATTCATTCGTAAATACTTAAACCAGTACCCTGAACGTCCCATGGTGAAACTGGCCCCAAACCAAGTTGTTAAAACCGAATGGAATGGTAAATGGTGGATTGCCCGAGTAGTAGAAGTTGATGGGTCCTTAGTCAAAATGAGTTTTGATGCTGATAAGCGCACAGAGTGGATTTATCGGGGATCTACTCGATTACATCCCCTTTTCAATGAACTGTCCAAACAAGCTGAGGCTCAGGCAGTTGGCTCAGGCACAATAACTCGCATGCGTGGAATGGGTGTAAGAAGGGTAAATCAACCATATGTAGAATATACTCAGAACACTGGAATTGAAGATGAAGGCAGTGAACCCGCTGcACCCACTGCAGTATCAGCGCCATCAACAGTTGTCCGTGCTGTAGCTAGAAAGAGTACTTCATCTAAGAAACATGAAATTCATGCTGTCATTCCACAGACGCCAACCTCTAAAACTCTGTTTTTCAGCCCAGATAACATTGGTATTGTTAAGGAACTACAACTGCCTAAGGATGCTCTCATGCCTAAGCGACTTCAACCTCATACATGTGGCCCCCATTGTATTGGATGGATTAAGTATGACCCTGTGAAAATGCGAGGTTACAATCCATTGTCAATCCCTCTCTACTGTGGGTGGCAAAGgGAATTACCAAGGTTTAAGAAGAAAAGCACAATCCTTTATACTGCTCCTTGTGGGAGAAGGTTACGAAACATGCAAGAACTGCATAGGTATTTACGCATTTGTAAATCGGAAATGTCTGTTGATTTATTTGACTTTGACTATTGGGTCAATGCATTGTCCGAATTCACTCTCACagataaattaaaaaaacatATTGTGCAGGAGGACATTACATGTGGCAGAGAAAATGTTAAAATACCATTGATCAACTATGTAGATAATTCGCTCCCTGCTAATTTAATTTACAAAAATCAACGCGAACCGTATGAAGGTGTGCCATTAAACAATGATCCTGCCTTCCTATGTGGCTGTGATTGTACTGATGATTGTCAAAACAAAGAAAAGTGTGCTTGTTGGAAACTTACTATACAGGGTTCTGCGCTATACCCTGGTGGTGTGGAGGATCCAAATGTTGGTTATTACTATAAACGACTACAGGAGCGTGTTATCACTGGCATTTATGAATGCAATGAACAGTGCAAGTGTTCAAAGAAAACATGCTTGAATAGAGTTGTCCAGCACCCACTGCAGTTGCAGTTACAGCTGTTCAAAACACCAAACAAAGGATGGGGTTTACGATGTGTGAATGATATCCCAAAGGGAACATTTATTTGTATCTATGCTGGATACCTTTATACTGAAGAAACTGCAAATACTaTTGGTGAATTAGAAGGTGATGATTACCTTGCTGAATTAGACTACATAGAAGTTGTGGAGCGTATGAAAGAGGACTATGAGAGTGATGTTGAAgatgaagaggaagaagaagaagaagatttTGTAGACAaaaatgcagAGAGAAGCCGATACAAAGGAGAAAGTGACTCTGACTACAAGTCAGGACGGAAAGCCTCACTGGATAGTAACTCAGATGCTTCCATTAGATCTCGATTACGGAAGAGAACTGCAGCTGACTTGGACTCTGGGGATGACAGTAGAAATACAGGTGATAAAGGGAGCAAAAGAAGAGAAACCTCTCAGAAAAATGATGCTGAAGATGATGACGGGAGTGATGATGACAAAATGGAACGTCTGCCTTCAAGCTTTACACCAAAGCCCTTAACAAAGACACCTATTACTGATACTCCAGTTCGACGCTTTCAATCAGTTCGCAAATTTTATGGACCAAATGAGCGTGTCTATATTATGGATGCAAATCAAGTGGGAAACATTGGGCGCTACCTTAATCATTCCTGTAGTCCTAATGTGTTCGTACAAAATGTATTTGTTGACACCCATGACCTCCGTTTTCCTTGGGTGGCTTTCTTTGCATTGCAGTATATTAAAGCAGGCGCAGAACTCACTTGGGATTACAATTATGATGTCGGCAGTGTGCCAGATAAACAAATTATCTGTCAATGTGGTAGCTTGGAATGCCGTGGACGACTTCTATGA
- Protein Sequence
- MEVDLTDDDCIMTTPIQLGASKTPASTPKTPKPPNKPSAPLEILEISDDDDDDIIFEPEKANPPSSGVSTSASKQSSDTLKKLQVSSKNDKTEDIQVFTPIPINERLPLLSSLAENVPKKHSAKDKSGTDDIIEVFDLPPSVSNTEKSKPSTSASVRTPSNSVAKNQSTLLPKDKATDPKVPSGQSKGFKGRSDPTVDDVIEVAESPPRNQEEFSSLNKEKSGANNVAEKNVSIGQAKQSRNVSTCRYVVDITDEEKSKQVTCYPKRNSENTCLNVGCKSGDDLKSAPMFVISYYGCKLKKGKYDVCAECFQAAVDHHAELANRLCHQESLFAYENFRINDIPIVDLESDEETSDNEEPLPFSVLLDLERNLEMALNESFSKYHLDYQIKEATGMLTDKMTSLELEGKKIDDQYDQLQKDIDEMRKKVYEKHNAIIRQVPSLDTATLTLPSTTPQQFDTSTKYPQNIQEYQPFMPHRGVAMKRVTNHSLHSPHRPISPTSLDGCSQEIVALREVNIPQAPLPPIGPLVRPKPRTDDIVYVMKMSFFGVWLRGRVIDVTNTSAANYITNTVYKVKMELQANKKQFSIKTVQGKHMAYPNPASVRLEVGTRVIAVFQDDESNNQNKGGSYYSGLIAEPPKPNNRYRYLVFFDDGYAQYVPHNKILVVCESSSNVWDDIHPDSREFIRKYLNQYPERPMVKLAPNQVVKTEWNGKWWIARVVEVDGSLVKMSFDADKRTEWIYRGSTRLHPLFNELSKQAEAQAVGSGTITRMRGMGVRRVNQPYVEYTQNTGIEDEGSEPAAPTAVSAPSTVVRAVARKSTSSKKHEIHAVIPQTPTSKTLFFSPDNIGIVKELQLPKDALMPKRLQPHTCGPHCIGWIKYDPVKMRGYNPLSIPLYCGWQRELPRFKKKSTILYTAPCGRRLRNMQELHRYLRICKSEMSVDLFDFDYWVNALSEFTLTDKLKKHIVQEDITCGRENVKIPLINYVDNSLPANLIYKNQREPYEGVPLNNDPAFLCGCDCTDDCQNKEKCACWKLTIQGSALYPGGVEDPNVGYYYKRLQERVITGIYECNEQCKCSKKTCLNRVVQHPLQLQLQLFKTPNKGWGLRCVNDIPKGTFICIYAGYLYTEETANTIGELEGDDYLAELDYIEVVERMKEDYESDVEDEEEEEEEDFVDKNAERSRYKGESDSDYKSGRKASLDSNSDASIRSRLRKRTAADLDSGDDSRNTGDKGSKRRETSQKNDAEDDDGSDDDKMERLPSSFTPKPLTKTPITDTPVRRFQSVRKFYGPNERVYIMDANQVGNIGRYLNHSCSPNVFVQNVFVDTHDLRFPWVAFFALQYIKAGAELTWDYNYDVGSVPDKQIICQCGSLECRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -