Tpal003649.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- kn
- Assembly
- GCA_012932325.1
- Location
- NW:401461-425229[-]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-230 2.6e-226 752.1 0.0 9 386 54 439 45 442 0.96 2 2 0.00011 0.79 7.6 0.1 414 444 441 471 439 503 0.77
Sequence Information
- Coding Sequence
- atggaggccctggagccgTGGGGCCGCAAGCTGTACGACGCCCACCACGGCATGCTGGGccaccaccagggccacctGCCGTTCGGCCTGGACGCCCACCACccggcgcaccgcgacgcgcaccgggACGCCCACCgggaccaccaccaccgcgtcgGCACCACCGCCCTCAAGGAGGAGCCGCTGACCGGCAGCCAGCTGCGGGCCTGGGTGCACCAGCCCAACCCCCAGGAGCACGTCAGCCTGGGGCTGAGTCGGGCGCACTTCGAGAAGCAGCCGCCCAGCAACCTGAGAAAGTCCAACTTCTTCCACTTCGTTATCGCCCTGTACGACCGGACGGGGCAGCCCGTCGAGATCGAACGGACGGCCTTCCTGGGCTTCATCGAGAAGGACCACATGGAGGCGGACGGCCAGAAGACAAACAACGGCATTCTATATAGGTTACAGTTATTATATTCAAATGgacTGCGGCAAGAACAGGATATCTACGTTAGACTCATAGACAGCGCCAGCAAACAGGTGATAGTGTACGAAGGGCAGGACAAGAACCCAGAAATGTGCCGAGTACTCTTAACACACGAAGTCATGTGCAGtcgATGCTGTGACAAAAAGAGCTGCGGCAACCGAAACGAGACTCCGTCCGACCCCGTGATAATTGATAGGTTTTTCCTTAAGTTTTTCCTGAAATGCAACCAAAACTGCCTAAAAAACGCCGGCAACCCCAGGGACATGCGTCGGTTTCAAGTTGTGATATCGAGCCAGATAGGCGTGGAGGGCCCGCTGCTCGCCGTGTCCGACAACATGTTCGTCCACAACAACTCCaagcacggccggcggcccaagCGGATGGACGccagcgacggcgaggccgacaCGGACTCAGGACTGTACCCGCCGATGCCCATGGCGTCGCCCTGCATCAAGGCCAtcagccccgccgagggctggACCAGTGGCGGGGCCACCGTCATCATCATCGGCGAGAACTTCTTCGACGGCCTGCAGGTCGTGTTCGGGACCATGCTCGTCTGGAGCGAGCTCATCACGTCGCACGCCATCCGGGTGCAGACGCCGCCCCGGAACATCCCCGGCGTGGTGGAGGTCACGCTCTCCTACAAGTCCAAGCAGTTCTGCAAGGGGGCGCCCGGCCGATTCGTCTACGTTTCGCTCACCGAGCCCACCATCGACTACGGCTTCCAGAGGCTCCAGAAGCTGATTCCCCGACACCCGGGCGACCCCGAGAAGCTGCCCAAGGAGATCATCCTGAAGCGggccgccgacctggccgaggcGCTGTACAGCATGCCGCGCAACGCCACCGTCGCCCCGAGCAACGGCCTCACGCCGGGGGTGGGCTTCAACTCGTACTCCGGCCAGCTCGCCGTCAGCGTGCAGGACGCCGGCAGGACGCAGTACGAAGACGGAATGGGCAGCCTGGTGCCGTCGCCCTTCAGCAACATGAACCCCTTCGCGCTGCCCACGTGCGCGTCGCAGGgctacggcacgccgcccctgcTCGGCTCCAAGTAG
- Protein Sequence
- MEALEPWGRKLYDAHHGMLGHHQGHLPFGLDAHHPAHRDAHRDAHRDHHHRVGTTALKEEPLTGSQLRAWVHQPNPQEHVSLGLSRAHFEKQPPSNLRKSNFFHFVIALYDRTGQPVEIERTAFLGFIEKDHMEADGQKTNNGILYRLQLLYSNGLRQEQDIYVRLIDSASKQVIVYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISSQIGVEGPLLAVSDNMFVHNNSKHGRRPKRMDASDGEADTDSGLYPPMPMASPCIKAISPAEGWTSGGATVIIIGENFFDGLQVVFGTMLVWSELITSHAIRVQTPPRNIPGVVEVTLSYKSKQFCKGAPGRFVYVSLTEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNATVAPSNGLTPGVGFNSYSGQLAVSVQDAGRTQYEDGMGSLVPSPFSNMNPFALPTCASQGYGTPPLLGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01434736;
- 90% Identity
- -
- 80% Identity
- -