Basic Information

Insect: Therioaphis trifolii
Gene Symbol: -
Assembly: GCA_027580255.1
Location: CM050407.1:40236149-40242146[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.5e-06 0.00096 20.8 3.6 1 23 208 230 208 230 0.98

2 14 0.00066 0.098 14.5 3.7 1 23 236 258 236 258 0.97

3 14 0.0017 0.25 13.2 1.8 1 23 348 370 348 371 0.94

4 14 5.9e-05 0.0088 17.8 0.7 1 23 404 426 404 426 0.98

5 14 0.48 71 5.5 2.1 2 23 444 465 443 465 0.91

6 14 0.0024 0.36 12.7 0.1 2 23 476 498 475 498 0.93

7 14 0.0045 0.67 11.8 5.1 1 23 505 527 505 527 0.98

8 14 0.032 4.7 9.2 4.4 3 23 534 554 533 554 0.93

9 14 0.011 1.6 10.6 0.0 3 23 561 581 559 581 0.95

10 14 2.9e-05 0.0042 18.7 0.2 1 23 597 619 597 619 0.98

11 14 0.00051 0.076 14.8 0.3 3 23 627 647 625 647 0.97

12 14 2.1e-05 0.0031 19.2 0.1 1 23 653 675 653 676 0.95

13 14 0.00038 0.056 15.2 1.8 1 23 689 711 689 711 0.96

14 14 5.3e-06 0.00078 21.0 0.1 2 23 988 1010 987 1010 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.5e-06	0.00096	20.8	3.6	1	23	208	230	208	230	0.98
2	14	0.00066	0.098	14.5	3.7	1	23	236	258	236	258	0.97
3	14	0.0017	0.25	13.2	1.8	1	23	348	370	348	371	0.94
4	14	5.9e-05	0.0088	17.8	0.7	1	23	404	426	404	426	0.98
5	14	0.48	71	5.5	2.1	2	23	444	465	443	465	0.91
6	14	0.0024	0.36	12.7	0.1	2	23	476	498	475	498	0.93
7	14	0.0045	0.67	11.8	5.1	1	23	505	527	505	527	0.98
8	14	0.032	4.7	9.2	4.4	3	23	534	554	533	554	0.93
9	14	0.011	1.6	10.6	0.0	3	23	561	581	559	581	0.95
10	14	2.9e-05	0.0042	18.7	0.2	1	23	597	619	597	619	0.98
11	14	0.00051	0.076	14.8	0.3	3	23	627	647	625	647	0.97
12	14	2.1e-05	0.0031	19.2	0.1	1	23	653	675	653	676	0.95
13	14	0.00038	0.056	15.2	1.8	1	23	689	711	689	711	0.96
14	14	5.3e-06	0.00078	21.0	0.1	2	23	988	1010	987	1010	0.96

Sequence Information

Coding Sequence: ATGGACACTAACTTCGCGGAAGACATTGTGTCCATTCATTCCGATAGCCAAACACTCGATTTCGGTAGAACAGACAATATGTTGTGCCCGGACGGTGTTGTTAACACTATCAAGACTGAATTTTTCAATACGGATGATATTGACGATGTTATGTCGTCAGACAATTCTTTAGTACAAAACATTGAGTCTTCATATTTCACTCATAGTGATTCACGGAAAAATGAATTCAATAATATGACTAGAGCAGTCATGGAATCTGTGCCATATGCTGATGGATTGCAATACCTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGGAAATGGATCCAGGGTTGCAAATTAAACAAGAGAATCACGACCCTAGTGATTTATTTGAGTCTAGTGATGAGGAAGTTCGTCCGATGAGTCAAGAAGAAATTCAAGAATATTTTGATGTTCAAGAAGAAGTTGTAGTTCAAGAATGTCCTGAGCAAGAAATAATCACACAAAGTTGGGACGTAAATCGGTCTGCTGATATTGATACATTATTAAATGCAGAAGTTCAATGTATTTCAACACCTGTAGATGTTGACATACCAATACCTGAAGGTGAAGAAGCATCGTCTTCTGTTAATCCATATCCATGTGATTTTTGCAGTCGAAGATTTAATCGAAAATCACATCTTATGAATCATATGGTTACTCATCAATCTGAACGTCCTTTTTGTTGTGCATTATGTGGTGTTCGATATCGACGTAAATGTGATTTAGCTAATCATATGAAAATACATATAGGTCCTGCTAATGTATCAGATAGTCCAGATAACCAAAGTACATCTGTTTCAAAAGCAATGAATAAATTAATGTTCATAGATCCTGTTCCTAGACGAAGTGTTACTCCTGGAGAAGAGCCCGAAGATAAAAGTGATGCTCATGTGGAACCTACCATAAGAAATCGTGGTCGTGGCCGTGGAAGAGGTCGTGGTAGAGGAAGAGGTCGTCCAATGAAAGATCGACTACTGTCTCTTGGTTGGAATTCCGAGTTATATTCAAAACCACATACATGTAATCCATGTGGTATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATGTTGATGATAGTGTAAATATTATAACCACACAAAAAACAAATTCAGATAGTTATGAGCTAACAATATTAGACAATTCTAAAAGTGATGAAGTTTCTTACCCATGTGATTCATGTGGAGTAGTTTTTGATAGATTTGATTTTTTAAAACGACATCAAAGGCAACATATGAAAAAAGAACTTGGAAGTGTCGAAGAAGAAGTATATGAAGAGGCCCATATGTGTATACATTGTGGACTGTTCTTTAAGACTATGATAGAGCTAGAATTACATACTGAACAACATTTAGTTCAAACAAATATAGCTGAAAAATCAAAATGTTTAATTTGTGGTGAAACATTTGATAGTACAGATGAGCTATCTGATCATGTTTCTCAAATGCATAATGATTCTTTATCGGCATTTTCATGCAAGTTTTGTGGAAAACAGTGTAAAGATGACAAAGCTCTACATAAACATTTAATGGTACACGATACATCGGATAATAAATGTATAATGTGTAGCAAAAAATTTCATTCTAGAGCTCGTCTTAAGCGACACATGATAACTCATCGGGAAAAAGGAGTTATTTGTGACATCTGTGGCGAAGAAGTAGCTGATAAACGAGCACTAATTAATCACAAAGCCAGTCATGCTAATACAGTTAGTGTCACTCGAAATTCATTAACTGAAAAAATATTTCCGTGTACCAGTTGTGGAAAAGTATTTGGATCTAGATCATCTCAACAGATTCATATCAGAATACATACTGGAGAACGACCTTATGGCTGTAGGTATTGTAAAAAGGCTTTTGCTGATGGCGGTACTCTCAGAAAACACGAACGAATTCATACTGGTGAAAAACCATATGCATGTCCTGTTTGTCCTAAAGCATTCAATCAAAGGGTCGTGTTACGTGAACACATACGAGCACATCATGCTGGAACAGAAGCTAGGGGTGGTCAAGTCAATTTTTATGAATGTAAAGTATGTGGCTATTTGTTTAGATCTTCGACAGAGCTTTGTTCTCATTTAGTTCAACATAGTGATGAGAATACAGCCAAATCAAGAGTAGTTCCTGTTGGACCTCGTAAATACAAACGTCGCAGCAAATTAGGCAATCGCAAAGATACATGGTGTTTAGTTGAAAAAGTATTTACAGTCATGTCTGGTCAGTCAGATACGGAGAGTTGTGAAGATGAACCAATGCCTTCAGTAGATGAACAAGCTGTACAATCTATTATAAATCAAGATGATTTGTCATATAGTCCTACTTCTTCGGCTAGTCCTAGTAAGTCTCCAGTTAAAACATTCAAGGTTGTTAATGGTAAATTGGTTAAAAACGAACAAAAGTCTTCTAAGCAAGTTTCTTACGGATCAAAACCTGTTCCCAAATCTGAGCCTATACCAAAAAAACAGTGTTATGTACTTAAAGAAGGAGAGTGTACTAGAACGTCTGCGACTGTGCTGTATTATTCTTCAAGATTAGATCCTACTGCTATTGATGCATCATTTGGAGAAGAATCAAAAGAAAATGATAATCCAGATGAACCTGAAGATCAAATATCTGTAGAGGATATGGATTTAACTAATATAAAAATTGAGCCACAACATAATAATGAACAAGAATTTACATCTCATGACTATGAAAATATATGTAATATTGAGTATGCTGATCAAGGTGAAGTTGAATATTATATTCAGAATAATGGCGAATTTGATGTGCAGGAAGATATAATTCTGGAAAATGTTAATGATGATTGCTTGATTGAGACACAACTGGTATTTGATTCTGATTATGTTGAAGAGGTTGGTGCTAACATTGAATTGAGCACTGAAGAAATACAGGTACCTGTGTATGTAGAATCCATTTCTTGCGATATCTGTGACGAAGTTTTTGAAGACAGAAAAGAACTTATGAGGCACATTCAAACTATGCATATAGGATAA
Protein Sequence: MDTNFAEDIVSIHSDSQTLDFGRTDNMLCPDGVVNTIKTEFFNTDDIDDVMSSDNSLVQNIESSYFTHSDSRKNEFNNMTRAVMESVPYADGLQYLAAISSFSDNFKEMDPGLQIKQENHDPSDLFESSDEEVRPMSQEEIQEYFDVQEEVVVQECPEQEIITQSWDVNRSADIDTLLNAEVQCISTPVDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMKIHIGPANVSDSPDNQSTSVSKAMNKLMFIDPVPRRSVTPGEEPEDKSDAHVEPTIRNRGRGRGRGRGRGRGRPMKDRLLSLGWNSELYSKPHTCNPCGISFTREKALLNHARLHHVDDSVNIITTQKTNSDSYELTILDNSKSDEVSYPCDSCGVVFDRFDFLKRHQRQHMKKELGSVEEEVYEEAHMCIHCGLFFKTMIELELHTEQHLVQTNIAEKSKCLICGETFDSTDELSDHVSQMHNDSLSAFSCKFCGKQCKDDKALHKHLMVHDTSDNKCIMCSKKFHSRARLKRHMITHREKGVICDICGEEVADKRALINHKASHANTVSVTRNSLTEKIFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCRYCKKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEARGGQVNFYECKVCGYLFRSSTELCSHLVQHSDENTAKSRVVPVGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPSVDEQAVQSIINQDDLSYSPTSSASPSKSPVKTFKVVNGKLVKNEQKSSKQVSYGSKPVPKSEPIPKKQCYVLKEGECTRTSATVLYYSSRLDPTAIDASFGEESKENDNPDEPEDQISVEDMDLTNIKIEPQHNNEQEFTSHDYENICNIEYADQGEVEYYIQNNGEFDVQEDIILENVNDDCLIETQLVFDSDYVEEVGANIELSTEEIQVPVYVESISCDICDEVFEDRKELMRHIQTMHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01170068;
90% Identity: -
80% Identity: -