Ttri010353.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- -
- Assembly
- GCA_027580255.1
- Location
- CM050406.1:28847946-28860567[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-13 6.4e-09 36.6 0.0 9 72 155 225 149 228 0.87 2 2 0.014 1.6e+02 3.3 0.0 29 71 355 396 341 401 0.77
Sequence Information
- Coding Sequence
- ATGTCTAAAACAGAAAAAATGAAATCTCATGCCAAAAAAGCATCCATTAAGATTTTAAAAACAGAAGCAAATTTTACTGGATTTGATGTTGATGATAATTTATTGTCTTCTATTGAAACAAAGAAAAATGGTATAATTAATATTTATTCTGATGTAAAAAGTAAGCCTATGGAAGTAAATACTCCAACAAACAGTCCATCCGTTGTCAACAATAATCATGTTAATAAGAAAAATCAATCTAAATCACGCGTCTCTTCGCCAGAGTCTAAGCATAGTAAAAGTAATAAAAGAGCAAAAAAAGATAATGTCCATAGTCAAGCAATAGAATCTGTTGATATTGTGAATGCTGTGCCTACTTTGGAACTTACAACCCCAACATTTAATCTCACATCCTCCTCACCTGAGAATCGCCGTAGTTCTAGTCGAAAACCATGTGTTGATATCACTGATCCCATTTTTAAACTTCCATTTGAATATGGATGGAAACGAGAATTAGTATACAGAACCACCGGTGATAATATAGCTGTTAATCGTACAAATAGAAACGGTGATGTATACTACTATTCACCAAATAATCGAAAGCTCAGATCATTACGTGAAATTCAAGAACAGCTGAACCTATCATTAAATGAAGAAAATCCATTAACAATTGACAGTTTTACATTTTTAAAACAACCTATTGGTTTGAATGATACATCAAAAGAACTTATCAGAGACGCAAATAGTAAAGTATCTAAAGAAGATTTTTTTGGTATTACTGCTCGATCCAAAAAATCAAAAACTCCTGTCCGACCACCATATGATTACGAATTGTCTGATAATGAAAATAACAAGTCTACAAGTAAAATGAAAATCGTCTTTAAAAGTCAAGCCAAGAAATCTAAATCTAAATCTAAAAAAGATAAAAataatttagaaGCAATGCTTACATCTTCATCTACACCAGAATACGTTGCTGAAGACTGGCAAGCTATTCAAGAAGTTACAGCACCAACAATTTCACCTTCCAAAGCTGATGATGTTGGAAAAAAAACTACAAACAATAAGAGACGGTTGTCAACATCAGATGGGGAAGTTATTATGCAGGCTCCATGTGGGATACGTTGTCCTAACAGCCAGGAACCTGCCACTTTAATGTGTGCTCAATGCCTGGTCTACTATCATCCAGCTTGTGTCAATTTAAATGCTAATCTAAAAATCGTTGGTTATGTGTGTATAAATTGTCGATCATTGGTACGACAGAGAAATAGACGTGTGCAGTCATCTCATACTGTGGTTGTTGGTGCTTCTGAACCAGAACAATTACGTGTTGAACCAATTCGTATACGGCAGGTTCAACAAGCATCAGATACTCCTAATTTCTTTATTGATAGAACGCCAATTTCCAAAACTGAAGAACCAAATTATGAAATTGATGAACACATTAATGAAAATAGCTCTGATAATAATACCGTCATATGTCAAGGAAAGGTTTATAAAACTGCTATGGTTGAAGGCAATTTTTATGAACAATATGTTTATGAAATGAAACAAACTCGAGGACCTAGTTTGATGACTTGTGTTATTCAAGAACCTAAAAATTTGGATGAAAATTCTGAAATGAATGGTGCATTAAGAGACCATCCTGATTCAATGGCAACTATGCAATCATTCAATTATATGGTAAAAGCTTTGAGACATGTTTTCAAGCACTTGAAAACACATGAACTATTATCAGCTTCCCGTGTATGTACTGCGTGGAACATAATTGCTATGGATAAAACCTTGTGGCAGACTGTTCGTTTAAAGAATTCTATGGTTTGTAACTGGAATAAATGCATTAATGCTATTCACGGCCATGCTACTGTTACATTGGACACAAGACGTATGTTGATACCTTCCAAACCTGAAGACTTTAATAAGTTTTGGCTGGAATTTACTATTGCACTTAAAAAAGCACAGCAGTTAAAATGCCTTGAACTGTATAGATGTTCATCTAATGTAGTTGAGGACACTATTTATTCATTACCCCAACTTACAGTACTTAATGCAACTTCAATAAAAAATCCAAATATAACAATAGAAACAAAAAATAATGCTAATAATGAATTTATGACCTTAAATTTGCATTACTTGGGCCAGATGACAAACCTTACAGAAGTTAGGCTTAAGGGTCTAACTGGAATAAAATTGACAACTTTACCATCATTTGAAAGTTTAGTTAATTTAAAATCTTTGTCATTAACTTCTTTTAAAGGATTCCCAAAAGATGTCTGCCGCAGTTTAGAAACTCTTTCAACAAGTTTGGCATTTTTTGAAATTGGAGACTGTGATTGCTTGTCTAAAGATTTTGCTGGTGTTTTAAGCAGATTAACTAATTTAACATCTTTAAGATTAGAAAATTGCTGCAGTAGATTTGAAAATTTTGCAGAGGATATCCTTTGTTCAATTAGAGGCCTTGAGAAACTCAAGATTCTGGAATTGATAAATATTGAATTTGGTAATAATGTTGAAGAAGGATTGGAAAAATGTACTAATATTAAAGCTCTACTGATAATTCCTGCGTATGTTAATCAATCTGCTACTACTAACTGCCACCTCATTGATTGTTTGAAGAAACTTTCCAAAACACTAACTCATCTTGTTTGGGTATTAACACATGAGTTGCTTCGTGTCACGGACTTATTTCTTACTCAATATCAACAAAATCAACATATTATTGGCTACGATTTAGAGTTATCACACACAAAAGAACCTTCTAATAATATTCCTATTCTGAGAACTAGAAAACCTAGACATCGACCAGTAAAAGAGTCTGATAAAGACAAAGATAAAGATAAGTCTGATAATGTTGACAtactctcggttccagctcttgaaaaattattagaaacaatgatgataaatgctaaaactaaagttgttaaagttcccttttcggcaacaactcgagtttacctacttgaacattttaatgatttataa
- Protein Sequence
- MSKTEKMKSHAKKASIKILKTEANFTGFDVDDNLLSSIETKKNGIINIYSDVKSKPMEVNTPTNSPSVVNNNHVNKKNQSKSRVSSPESKHSKSNKRAKKDNVHSQAIESVDIVNAVPTLELTTPTFNLTSSSPENRRSSSRKPCVDITDPIFKLPFEYGWKRELVYRTTGDNIAVNRTNRNGDVYYYSPNNRKLRSLREIQEQLNLSLNEENPLTIDSFTFLKQPIGLNDTSKELIRDANSKVSKEDFFGITARSKKSKTPVRPPYDYELSDNENNKSTSKMKIVFKSQAKKSKSKSKKDKNNLEAMLTSSSTPEYVAEDWQAIQEVTAPTISPSKADDVGKKTTNNKRRLSTSDGEVIMQAPCGIRCPNSQEPATLMCAQCLVYYHPACVNLNANLKIVGYVCINCRSLVRQRNRRVQSSHTVVVGASEPEQLRVEPIRIRQVQQASDTPNFFIDRTPISKTEEPNYEIDEHINENSSDNNTVICQGKVYKTAMVEGNFYEQYVYEMKQTRGPSLMTCVIQEPKNLDENSEMNGALRDHPDSMATMQSFNYMVKALRHVFKHLKTHELLSASRVCTAWNIIAMDKTLWQTVRLKNSMVCNWNKCINAIHGHATVTLDTRRMLIPSKPEDFNKFWLEFTIALKKAQQLKCLELYRCSSNVVEDTIYSLPQLTVLNATSIKNPNITIETKNNANNEFMTLNLHYLGQMTNLTEVRLKGLTGIKLTTLPSFESLVNLKSLSLTSFKGFPKDVCRSLETLSTSLAFFEIGDCDCLSKDFAGVLSRLTNLTSLRLENCCSRFENFAEDILCSIRGLEKLKILELINIEFGNNVEEGLEKCTNIKALLIIPAYVNQSATTNCHLIDCLKKLSKTLTHLVWVLTHELLRVTDLFLTQYQQNQHIIGYDLELSHTKEPSNNIPILRTRKPRHRPVKESDKDKDKDKSDNVDILSVPALEKLLETMMINAKTKVVKVPFSATTRVYLLEHFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -