Ttri002226.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027580255.1
- Location
- CM050405.1:29251821-29257927[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.094 4.3e+03 -2.0 0.6 61 74 138 151 117 168 0.68 2 3 3.6e-96 1.7e-91 308.0 35.0 1 300 179 476 179 476 0.92 3 3 0.006 2.8e+02 1.9 5.7 120 172 474 526 473 536 0.92
Sequence Information
- Coding Sequence
- ATGAGTGTATCATCATGTGATCTAGTCACTGGAGCACATATCACTCATATTTATATAAACCAAACACCAGATAAATTAAATGATAAATCATTGGATACCAAATTACTCGTCAGTGTACCCGTTGAATTTAATTCATCTAATTCCACGTTTGCATTCAATGAATCGCCGTCAATCTATTCTGATAACAACGACGTAGATAACAAGGGGACATATTCTTGTCGAATATGTATAAATGACGATGATACATTGAATTCAGTTAAGGAGACAATAAATACAAATGAGATTCATGCAGAATGCAACATTGATACAAATCGTTCTACTTCTCCATTGGAAGATAATGAATATTATTGTGAATATACTATTGCTGATATTGATGAAATATCAGATGGTATTTCGAACGATCGTCAAGCGAGTATTCTTAGGATACAAAGTTCTAGACGTTCTAGTTTTACTTATTCCAGTAATGAATCTTTAGTGAGTGATTCTGAAACTAGTAATGGAATTGTTACATACCTGGACAAGAGTAATAATGAAGCTGAAGCCCGTTTGGCCGCAAGACGTCAAGCCCGAGCTGAAGCTAGAGAAATTCGTATGCGAGAAATTGAAAGACAGCAAAAAGAAGCAGAAGAAAATGCCGATAAGGCTTTTGATATGCATGCAGCAGATGGGCCCAGTCGAATATCCCGAGTAGCTGCAAATTCTGGCAGTCCTCGAGCATCTAGTTCCATACTAAACACAAGCAGTTACCAATCTAGTAGACGTAATTCGGTTGATTCTCTTGACGAATCAACTCCTAATTATCAACGTGATTATAGGATGGAGTTAAAAGACCTAGAAGAGAAATTTCGAAAAGCAATGGTTCAAAATGCTCAACTTGATAATGAAAAGGCAGCTGTTACATATATGGTGGAATTGTATAAAGACAAATACACTGATATTGAAGAAGAACTGATGCATATAAAAAGAGAACATAAAGAAAGTTGCAGGGAAAACGAAAAATTAAAACGTTTATTGAGTTCTCAAAAATTAGAGTTTAAAGCCCTTCAACAAGAGCTTGAAGACCGTGATAAACTTATAGAGGAAAAAGGACTAGTTATTATCAGCACAGAAGAGGAAGAATTTAATGAGAGTAATAACCAAAGTAATTGTAAAATAAAACGTGCCTTAGTTTCTGCTGAAAACGCTCAAATGCTTCAAAATGCAGAAGGTTGTCTAGATGTGCGACTCCAAAAGTTTGCGGAAGAACGCAATAACTATTTAGATGAAATCAGCCGACTCAAACTAGAGTTACAAGAGGCCAAACTTCATAGTGATAGCCATTATAATGGTACAGATTCAGACGAACTGGAAGATGCCCAAAAAGAAACAAACAAAGTTCTTGGTGATTATAAATTTAAATGGCAAAAAGCTGAACAAGATATTTCTACATTACAAGCAAATGTAGCTAGACTTGAAAGTCAAGTTATTAGATATAAAACTGCCTCAGAGGCATCTGAAAAAGCGGAAGATGAGCTTAAAATGGAGAAACGAAAACTTCAACGTGAGCTCCGAGAATCTCAAGCAAAAGTTGAAGAGTTAGAGACTTCTAACATGCATTTATTGAAACGCTTTGATAAATTAAAAAATGCAAAGTCTAGTTTATTAAAAGATTTGTAA
- Protein Sequence
- MSVSSCDLVTGAHITHIYINQTPDKLNDKSLDTKLLVSVPVEFNSSNSTFAFNESPSIYSDNNDVDNKGTYSCRICINDDDTLNSVKETINTNEIHAECNIDTNRSTSPLEDNEYYCEYTIADIDEISDGISNDRQASILRIQSSRRSSFTYSSNESLVSDSETSNGIVTYLDKSNNEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPSRISRVAANSGSPRASSSILNTSSYQSSRRNSVDSLDESTPNYQRDYRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLSSQKLEFKALQQELEDRDKLIEEKGLVIISTEEEEFNESNNQSNCKIKRALVSAENAQMLQNAEGCLDVRLQKFAEERNNYLDEISRLKLELQEAKLHSDSHYNGTDSDELEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKMEKRKLQRELRESQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -