Ttri028638.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- bab2_3
- Assembly
- GCA_027580255.1
- Location
- CM050407.1:26215697-26218096[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-12 1e-09 39.2 0.0 4 45 387 428 384 428 0.92 2 2 5.9 2.4e+03 -0.3 0.2 11 20 452 462 451 463 0.82
Sequence Information
- Coding Sequence
- ATGACTAGCAACCATTTGAATACCATTTCTGGACCAGATCAACAGTACTGTTTGAGGTGGAATAATCACCAAACAAATCTCACCAATGTATTTGTGCAATTATTCCAATCTGAAGAGTTTACTGATACTACATTGTTTTGTGAGGGTGGACCACCAGTAAAATGTCATAAAATGGTATTGGCTGCATGTTCATCATACTTTCAGTCAGTATTTGCTGAAGTACCTGGTAAACATTCTGCAGTTGTTCTAAAAGATGTTGGCCATTCTGAAATGAAAGCAATACTTGACTATATGTATAAAGGGGAAGTAAATATTGCTCATGATCAATTAGCTGCTCTACTTAAAGTTGCCGAGATGCTTAAAGTTAAAGGACTTGTTCAAGACAGTAATACATATCAACCACCTCAGAGTGCAAAACCTGCTGTCGATGAAGACCGTAATATTATAAGCACTTCATCTCCCAATCATGTATCACCAGATGGTAACACAAGTACATCCAAAGAACTCGCCATCAATATTAACAACAATAATGAACAAAATGATTCACCACCACACAGTACTGGGATCAGTAATCAATCACCATTCTACAACAAGAACTATTATGGAAAATCACCACCATTATCTGATCACAGACCTGGAAGAAGTAACGTTCCGATGTGGCCCTTACCTGTTTTGCAGATGACTTCAACACCAGTGACAAATGCAATGTTTGGCGGTAGTTATGACGCTATGGTTGCTGGACATCCAGGAATGTCACCATTGCGCCGTAAAAAATTATCTAGCATGTTAATGGGTCGAGACACTCCAATATTAAGGACCGTACTTGGACAAGGTCAAGCCGATTCGTCGCAGCAACTTCCTCCAATCATGTATAACTCTGAAGCAATGGAACATCATAGACCACAGTCTAATGGATCTGAACATAGTAGCCAATTTTCAAAGATGAAAATGGAAGGATCAGAACCTCATTCTCCATATCCAACTGATATGTCAATGAATGATGATGAAGAAATGATAAGGATGGGTAAAATGAATAATTCATCCTCGCCCCAGTCTATATATGGAGACTCTAAAGGTGGTTTAGTAACTCCAGGAATCGCCACTTATGTCCCGTCTCATAAACCTGAATGGAAAAGATACAAGCAGTATACAAGGCAAGATATTATGTCTGCAATTGATGCTGTTAGAACTGGGATGAGTGCATTACAAGCTTCTCGAAAATTTGGAGTTCCGTCTCGCACCCTTTATGATAAAGTGAAGAAACTTGGTATAACCACGAGTCGTCCATTTCGTAGATCAGGAGTCAACAATGGTAATCTTGGATTTGCATATGGATTAGGTCCAGGTACTAGTAGTGTTATGTTCTCTGGTCAAATGTCTGTAGCTGAAGACGAATCTGGTCATTCTTCAGTCATGGAACATGCAACCGCTGGTTTCTTACAACATGCTCTAGGATTAACTGGGGCGTTAAAGTCTGACCTTGAAACTTCTAACAATGGACATTCACCTCGTTCAGATAGAATGGATGAAGGAGGCTCACCATGTAGTCCAGAACTGATAAAATATGCTGGACACAGAGAAAATACCAGATCACCAACTCCGACTGACAACGATGATCAAGCACAGGATTTATCAGTGTCTCGTAAATCTGAAACATCAATGCAAGCAACACCTACGTCTAGGGTTATTATGGCGCCTATTAGTCAAACGTCTTCTGTACCTATCTTAACTGCTGGTACTGATGATAGGGACTGA
- Protein Sequence
- MTSNHLNTISGPDQQYCLRWNNHQTNLTNVFVQLFQSEEFTDTTLFCEGGPPVKCHKMVLAACSSYFQSVFAEVPGKHSAVVLKDVGHSEMKAILDYMYKGEVNIAHDQLAALLKVAEMLKVKGLVQDSNTYQPPQSAKPAVDEDRNIISTSSPNHVSPDGNTSTSKELAININNNNEQNDSPPHSTGISNQSPFYNKNYYGKSPPLSDHRPGRSNVPMWPLPVLQMTSTPVTNAMFGGSYDAMVAGHPGMSPLRRKKLSSMLMGRDTPILRTVLGQGQADSSQQLPPIMYNSEAMEHHRPQSNGSEHSSQFSKMKMEGSEPHSPYPTDMSMNDDEEMIRMGKMNNSSSPQSIYGDSKGGLVTPGIATYVPSHKPEWKRYKQYTRQDIMSAIDAVRTGMSALQASRKFGVPSRTLYDKVKKLGITTSRPFRRSGVNNGNLGFAYGLGPGTSSVMFSGQMSVAEDESGHSSVMEHATAGFLQHALGLTGALKSDLETSNNGHSPRSDRMDEGGSPCSPELIKYAGHRENTRSPTPTDNDDQAQDLSVSRKSETSMQATPTSRVIMAPISQTSSVPILTAGTDDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418207;
- 90% Identity
- iTF_00670378;
- 80% Identity
- iTF_01434181;