Ttri041330.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- bab2
- Assembly
- GCA_027580255.1
- Location
- CM050410.1:6104193-6108834[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-11 3.4e-08 34.4 0.0 2 38 422 459 421 464 0.89 2 4 2.1e-11 8.5e-09 36.3 0.1 2 39 476 513 475 516 0.94 3 4 9.6e-17 3.8e-14 53.4 0.0 3 45 532 575 530 575 0.97 4 4 3.6e-16 1.4e-13 51.6 0.1 1 43 582 625 582 627 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAACGGCCAGCATTACTGTTTGCGCTGGAACAATTACCAATCAAACATGACTTCTGTGTTTCATCAACTCCTGCGAAACGAATCTTTTGTTGATGTCACACTTGCATGCAATGAAAGTACTCTTAAAGCCCACAAAGTAGTTTTATCAGCATGTTCTTCTTACTTCCAAAAACTATTGATGGACAACCCATGCAAACATCCAACCATTATACTACCTTATGATGTTTGTTTTAATGACCTAAAGTTTATCATTGAGTTTGTGTATAGGGGTGAAATCGATGTGTCCCAAGCTGAATTACAGTCTCTTTTAAAGACAGCTGATCAATTGAAGATTAAGGGACTGTGTGAAGTACCTGAAGATGAACGTGATACATCTATCATTGCTGAAGTAACTCCTCTGGGGCCATTAAAAAGTGGTGGACGAGTGTTCACCAAATTACAGCGTAGAACTTCACCTTATCTGAAAAAATCGAGTCCCAGTCATGTACAACAGGATCAGTTACATCGAAGCTATTATCGAATGGAACAATCTGGATTTGCATCTAATAATGTTGATCAGGAGAACAAATCTATGAATTCTATCCATTGTATGACTGTTGCTACATCTACTGAAGAAGATGAGAAAGATATTAAATCCACATTAACAGATTTGCCAGTTGTCATATTAGAGTCACATCCAACTATAAGTTTACAAACCCAACAACAGCCTCAAATAGTCCATATACCTATACCTCAACAACAATTGAGTCATGTAACTCAACATTCAAATCAATCACAGTTACAACAAACTGCTGTTCAAACTCATTCACAAATGATTATTACCACAGGCCCTGTTATGACAGTTAATGATGCTGACATAACACCTGATATGCAGCCTGTTGGACCAAGGGCAACACCAGTATCTGTAAAAAATAATACAAGTCCATCATCTACTCCTACACATAGAGATATGGCAGTTGGTACATCATGTTTAAATGATGTGATGAGAAATGATGGAAGTGAAGTAAAATTTGAAAGTTCTAAATTTGAAACACTTCGTACTCTTGACCAATCATCTGATGGGATTGGAATAGAAAGACAACATTCTAATGACCATAATATGAATGATGAAGATAGTTCAATGCATACAATGATGATAACTCCTGAACTACTGGGCTTATTACCAAATTCTTCTAATGCAGGAGATGCTAGTGAAGATAGTTCTAGTAACAATATAAATAAACAGTTTGGTTCTAATGGAAGTAAAGGATGGACAGCTGATGACATGGAGAATGCTTTAGAAGCATTACGTTCACATAACATGTCTTTGACTAAAGCATCCATAACATTTGGAATTCCTTCTACTACACTATGGCAGCGAGCTCATCGAGCTGGAATAGACACTCCTAAAAAAGATGGACCTGCAAAATCATGGAATGATGAAGCCTTAAATGTTGCATTAGAAGCTTTACGTACTGGTACAATTTCAGCGAATAAAGCTAGTAAAGCGTACGGTATTCCTAGTAGCACTCTATATAAAATAGCTCGGCGAGAAGGAATTCGATTAGCTGCTCCATTTAATGCTGCACCAACATCATGGGGTCAGGAACAATTAGACCAAGCATTGCATGCCATACGAACTGGGCAAATGACTGTGCAACGAGCTGCAGTTGACTATGGCATTCCATCTGGTACTCTATATGGTCGCTGCAAACGTGAGAAAATTGAGTTGTCTCGTAGCAATCCAACACCATGGTCTGAAGATGCTATGATGGAAGCACTAGAATCTGTACGATTAGGCCATATGAGTATTAATCAAGCAGCTATACATTATAATCTGCCATATTCTTCGTTATATGGTCGATTTAAGAGGGTAAAGTATGGAGCTGGACATCCAGATGATGACTGTGATGATATGGTTGATTCAGACACACAGAGTGAACATCACTTgcagcagcagcagcagccacaacagcagcagccacaacaggagcagcaacaacagcagcagccgtcaaatcagcaAGTTCAAGCTACTCCAGTATCTCAAATTATGTTGGTACAGTATCCTGCACCGCAGATTCAAATGTATCAGCATCACCCAACTCATTCAACAACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIIAEVTPLGPLKSGGRVFTKLQRRTSPYLKKSSPSHVQQDQLHRSYYRMEQSGFASNNVDQENKSMNSIHCMTVATSTEEDEKDIKSTLTDLPVVILESHPTISLQTQQQPQIVHIPIPQQQLSHVTQHSNQSQLQQTAVQTHSQMIITTGPVMTVNDADITPDMQPVGPRATPVSVKNNTSPSSTPTHRDMAVGTSCLNDVMRNDGSEVKFESSKFETLRTLDQSSDGIGIERQHSNDHNMNDEDSSMHTMMITPELLGLLPNSSNAGDASEDSSSNNINKQFGSNGSKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNVALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQMTVQRAAVDYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMVDSDTQSEHHLQQQQQPQQQQPQQEQQQQQQPSNQQVQATPVSQIMLVQYPAPQIQMYQHHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01434178;