Ttri025073.3
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- Rfx2
- Assembly
- GCA_027580255.1
- Location
- CM050411.1:22773200-22779053[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-38 9.6e-34 117.2 0.0 3 78 285 360 283 361 0.97 2 2 1.6 1.8e+04 -2.3 0.0 13 38 499 522 495 543 0.61
Sequence Information
- Coding Sequence
- ATGGCGACTTCTGTAAGGAGTGGGATCAAATTAGATGGCTCTGCAGGTACTGGTTCTCAAATTAGTACCATAACTGTTGTAACTGCTGGTGGGGTCGGTCAAACGCTCGTTGTGCAACCAGTACAACAAGCATCTGTTGTGCGTACATCTCTTGACCAGAATGTCAACAATAATAGACAACTGGAAAATGCTATTTTGTGTGGCACTAGTCCAGTTCATGATGATGGATCTGATAAATCAATAGATGATGATGAACATCACATAGATCATAAAGATCGAAATACATCTACAGTTACTGTTGATAATGGTCATTATATTGTGGCAGCATCAGAAGGGACTCAAGGACGATCTTATACTTCCCTTACACCTGTACCAACATTGGTTCCTGAAGGAGAAACCGTTGGTTCTGATGATGTTGGTCATTCTACTTATGTTCAGTATGTTGAAGGCACTGGCGAACAAGCAATATTCACTAATGGCCAAATGGCATATCCAGTTTACACTGTGGGCGAAAGTGGAACTATGTATCAGACTGGTCAAACCCATTATTACACCCCAAGCACAAATTCTTATTCACAAGTTACAAATACCTTAGGTCAACCAACATGTCAGGCACAAATTATTGGTAATGGAACTTATATCATTCAACAGAATGTTGACAATGATCATACTATTATTGCTACTACCCAAAGAGACAGCCCAAATTCTGCTATATCTTCGGATGTATCTTATCTTACAGTAAATGCTACTGAATCAGGAGCTGCAAATTCTAATATTGATCAATTAAATGGTGTCGAGTCTGATGGAGGAATGCAAAACTCTGGTCTTATGCATGCCAATAGAATTTCTCCAGCAACTGTAAATTGGCTGATGGAAAATTATGAAATGGCTGAAGGTGTTTCTTTACCACGATCAACGTTATACAACCATTATTTAACTCATTGTTCTGAAACTGAAATCGATCCTGTAAATGCAGCTTCATTTGGTAAACTTATCCGGTCTGTGTTTATGGGATTACGTACGAGACGTCTAGGAACTCGAGGAAATTCTAAATATCATTATTATGGTATTAGAATTAAAGCAAGTTCTTTGTTAAATGATTTTTCTTCTGAAGAGAGCCTACCCAGTCGAACAAATCAAAGTAGTAGTTCTAAAAAAATTAAATTTATTAAAACTGAAGAGCGTAATTGCAATCAATACACTACCAATAGTTCAGACTCAGCTAATTGTTCTCAAAATAGTATCCCATCTTCTCCTCAAGCACAAAATCAAGAATATTTAGGTGATGGTGCTAATGCTGTTCCAGAATTTCCAGATATTATACTTGATGAAATACAATTGGATGATAATTGTACTCTAGAAGATGTAGATACATTCAAAAATCTATATCGTGAACATTATGAAGCGTTTTTAGGTGCTATATTGAACTTGGAATTTGGAACTGTTGAATCACTTTGGCGTGAATTTTGGCGTAGTCAAGATAACAATAATGATGAATGTGAAGAAGAAAAATATCTCTCTAAAGAAAAATTATATTCTCTTTCTAAATGCAAAACAATGCAACTGTTTGTGAAAACGGTTGATTTTCTATTTTACCAAAATTTGGTGAAAGTTTTAATTCCAGATGTTCTTCGACCTGTTCCTGGAACATTAACTCAAGCTATAAGAAATTTTTCTAAAGGATTGGAATCTTGGCTTACATCTGCTATGCAAGGGTGTCCAGAAGAAATGATCTCAATTAAAGTTACTGCTGTTAGTGCATTTGCACAGACATTACGCAGGTATACGTCACTAAATCACCTTGCCCAAGCTGCACGAGCTGTGCTTCAAAATTATACTCAAATAAATCAAATGCTTACTGATTTAAACCGTGTTGACTTCCGTAATGTACAAGAACAAGCCTCTTGGGTGTGTCAATGTGACTCAACATTGGTTCAGCAATTAGAAGCTGATTTTAAGCACACCTTACAACAACAAAATTCCTTAGAAGAATGGGCAACATGGTTGAAAAGTGTTGTTGATAATTGTTTAAAACAATATCGTGACACACCTAATTTTACTAAAGAAGCTAGACAGTTTCTTTTAAAATGGTCATTTTATAGTTCAATGGTAATACGTGATTTGACTTTGCGTTCAGCTGCTAGTTTTGGTTCGTTTCACCTAATACGCCTACTTTATGATGAGTATATGTTTTATTTAATTGAACATGAAGTGGCTCTAGTCACTGGAGAAACACCAATTGCTGTGATGGGTTCGGGAGATAAAACCATACCTACAACAGTCTTAATTGACTATGAATCAACTGAGTATACCACTAACTGCAATGGAAAACGCGTGAAAATTAACTAG
- Protein Sequence
- MATSVRSGIKLDGSAGTGSQISTITVVTAGGVGQTLVVQPVQQASVVRTSLDQNVNNNRQLENAILCGTSPVHDDGSDKSIDDDEHHIDHKDRNTSTVTVDNGHYIVAASEGTQGRSYTSLTPVPTLVPEGETVGSDDVGHSTYVQYVEGTGEQAIFTNGQMAYPVYTVGESGTMYQTGQTHYYTPSTNSYSQVTNTLGQPTCQAQIIGNGTYIIQQNVDNDHTIIATTQRDSPNSAISSDVSYLTVNATESGAANSNIDQLNGVESDGGMQNSGLMHANRISPATVNWLMENYEMAEGVSLPRSTLYNHYLTHCSETEIDPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGIRIKASSLLNDFSSEESLPSRTNQSSSSKKIKFIKTEERNCNQYTTNSSDSANCSQNSIPSSPQAQNQEYLGDGANAVPEFPDIILDEIQLDDNCTLEDVDTFKNLYREHYEAFLGAILNLEFGTVESLWREFWRSQDNNNDECEEEKYLSKEKLYSLSKCKTMQLFVKTVDFLFYQNLVKVLIPDVLRPVPGTLTQAIRNFSKGLESWLTSAMQGCPEEMISIKVTAVSAFAQTLRRYTSLNHLAQAARAVLQNYTQINQMLTDLNRVDFRNVQEQASWVCQCDSTLVQQLEADFKHTLQQQNSLEEWATWLKSVVDNCLKQYRDTPNFTKEARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHEVALVTGETPIAVMGSGDKTIPTTVLIDYESTEYTTNCNGKRVKIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308577; iTF_01305281; iTF_00468708; iTF_01346215; iTF_01346827; iTF_01167343; iTF_01032624; iTF_00184340; iTF_01303924; iTF_01304597; iTF_00972790; iTF_00811705; iTF_00133978; iTF_01169594; iTF_01328346; iTF_00135899; iTF_00463102; iTF_00018752; iTF_00669984; iTF_01037478; iTF_00418028; iTF_00940110; iTF_01031698; iTF_00340319; iTF_01499389;
- 90% Identity
- iTF_01037478;
- 80% Identity
- -