Basic Information

Insect: Thereva unica
Gene Symbol: prdm10
Assembly: GCA_949987705.1
Location: OX465285.1:86539323-86543684[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.7e-05 0.022 17.2 0.3 2 23 143 164 142 164 0.96

2 11 0.00021 0.059 15.8 2.3 2 23 199 220 198 220 0.97

3 11 9.7e-06 0.0028 20.0 1.5 2 23 243 264 242 264 0.97

4 11 1.4e-05 0.0041 19.5 0.1 1 23 272 294 272 294 0.99

5 11 0.39 1.1e+02 5.5 1.6 1 23 299 321 299 321 0.92

6 11 0.0075 2.2 10.9 5.6 1 23 327 350 327 350 0.96

7 11 0.094 27 7.5 0.8 1 23 355 377 355 377 0.91

8 11 9.9e-06 0.0028 20.0 1.5 1 23 383 406 383 406 0.94

9 11 0.00035 0.099 15.1 0.6 1 23 457 480 457 480 0.97

10 11 0.002 0.56 12.7 3.8 1 23 502 525 502 525 0.97

11 11 0.054 16 8.2 1.7 2 23 557 579 556 579 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.7e-05	0.022	17.2	0.3	2	23	143	164	142	164	0.96
2	11	0.00021	0.059	15.8	2.3	2	23	199	220	198	220	0.97
3	11	9.7e-06	0.0028	20.0	1.5	2	23	243	264	242	264	0.97
4	11	1.4e-05	0.0041	19.5	0.1	1	23	272	294	272	294	0.99
5	11	0.39	1.1e+02	5.5	1.6	1	23	299	321	299	321	0.92
6	11	0.0075	2.2	10.9	5.6	1	23	327	350	327	350	0.96
7	11	0.094	27	7.5	0.8	1	23	355	377	355	377	0.91
8	11	9.9e-06	0.0028	20.0	1.5	1	23	383	406	383	406	0.94
9	11	0.00035	0.099	15.1	0.6	1	23	457	480	457	480	0.97
10	11	0.002	0.56	12.7	3.8	1	23	502	525	502	525	0.97
11	11	0.054	16	8.2	1.7	2	23	557	579	556	579	0.97

Sequence Information

Coding Sequence: ATGATTTACTTGAACTATTACTATTTACAATTTTCAGTGCTACAAGTTCTTGCTAAGAAAGAGATTCCATCACGTGcaaaatttggaccatttgaAGGCGAAGTACATTACAACATTACCATTTCCTCCGAATACTCAAGCCAATACCCAATACTATTTTTGCCAGACTCCAAAATATTGGCCGTCTCGAATGAAAACACTTCAAACTGGATGAGGTTTGTCCGATTGGCTCAAACATACTGCGAACAGAATCTACTTCTATTTGAAGACAATGGCAAACTTTACTTTAAATGTTGTCGAACAATAAACGCAAAAGAAGAACTTAAAGTTGGATATAGTGAAGAGTATGCACAAATATACAATCTTACGTATTTAACACCGAATGAACAAGAAATCCGTGAAATTTACGAGAAAGATAACCCATGGGTTTGTTTTGAATGTGACCAAAGATTTCCAACTTCGAATGATATGCAGAAGCATCTTAATATTCATGAATGCGATGAAAATGCGGATGTTGTTAACAACAAGCGAAAGAAGAAAGTACGAAAAAAGAAGATACATTTGAAAAGAGTCGATGTACGCAAAAATTCAAGTAGATGTTGCTATTGTCTTAAAGTTTTCATGACTAGCGTTAGCTTAAAGAAACATATGGCAGTTCATCTGGCTGAGAAGAGAAATGGAAAGAGCTTATCGAAAAATACTGGCTCTGAATCGAATTATGCCTTAAAGTGCAATGTTTGTAATAAGCGGTTTAGTTCCGAAGAGAAATTAAAGAATCACCGATTGATTCatatcaaaaatgatatcaaGCCCTATCAATGTCCTGACTGTCCAGCAAGTTGTTCTACTCCAGCTGCTTTGTATGCTCATGTTAAGAGCCACACAAATCCGCGCTTCACTTGCATCTTTTGTTCAGAATCCTTTAAACATGTCATCGAGTTTAAGAATCATGTAGCTTTACACTCAGTAAATGGATATTTTGAttgtaatttttgtaaaaagaaatatCGACAATATTATTTAGTCCGAAAACACGTTCGAATTTGCCACTCTTCCCAAAAATATTCATGCGATATCTGTGATCGTCAATTTCTTAACTTATACATTTTGAAAAGACACAAAGTTAGTCATTCGGAAAAGCGTGAATTTCTCTGCTCTGAATGCGGCCGGCAATTCAAAAGGAAAGACAAACTACGAGAGCATATAACACGAATGCATTCGGAGCACaagaaaacaaattcaaaaaagaaaCGAATCCAGAAAGAAAATCCAGTTAGTGATGGATCGCAATATCTAGAGCTTAGTCCAAAGAAGGTGAAGCCAACAAAAGCAATAAAGAATCACTCAAACGATTATCATTGTTACATATACAAATGTAACGATTGTATGCTAGGCTTCAAGCGGCGTGGAATGCTAGTTAATCACATGGCAAAACGGCATCCTGACATTCGCATAGAAAGCATACCAGAGCTTAATTTACCAATTATAAAACCGCAATCACTATTCTACTGCCAACATTGTACCAAAGTCTACAAAAGTAATGCCAAAAGAAAAGCACACATACTTAAAAATCATCCAGGTTTAGAACTACCGCCATCAGCACGAAATACTTCAGAACCAGCACAAATTCATGCTAGAACTATTGGTAGCCTAAAAACCGAACCGCAACGGTGCCAGTGGTGCTACAAGCAATATGCATCAAGAAATCGACTATTGCTACACTATCGCAAATCGCATCCTGATAAACAAATCATAGATAATATTAAGCAAGAATTTACACAAGTAGAACCATTAATAATTGATAACTATAGACCACCACAATCTCCTGAGAATAAGCTGTTAAAATTATCTTCAGCTGCTTTGGAATTATCCTCGATTGAAGATCGgaaattctttgatttcttaAATGAAAGATCACAAGAGCCCAACTCTTTGGCTACAACCGGTTCGTTAGAGGATAACGCAAACGGGTTTTCGAAGgttgatgttaattttaaaGTTGTCGATGGTGAATTTTCTGAAACATCCTCAAATGCCGAAATAAATAGACTTCCGCAACTTTTTGAAGAGTCTATTGCTTGCATTtag
Protein Sequence: MIYLNYYYLQFSVLQVLAKKEIPSRAKFGPFEGEVHYNITISSEYSSQYPILFLPDSKILAVSNENTSNWMRFVRLAQTYCEQNLLLFEDNGKLYFKCCRTINAKEELKVGYSEEYAQIYNLTYLTPNEQEIREIYEKDNPWVCFECDQRFPTSNDMQKHLNIHECDENADVVNNKRKKKVRKKKIHLKRVDVRKNSSRCCYCLKVFMTSVSLKKHMAVHLAEKRNGKSLSKNTGSESNYALKCNVCNKRFSSEEKLKNHRLIHIKNDIKPYQCPDCPASCSTPAALYAHVKSHTNPRFTCIFCSESFKHVIEFKNHVALHSVNGYFDCNFCKKKYRQYYLVRKHVRICHSSQKYSCDICDRQFLNLYILKRHKVSHSEKREFLCSECGRQFKRKDKLREHITRMHSEHKKTNSKKKRIQKENPVSDGSQYLELSPKKVKPTKAIKNHSNDYHCYIYKCNDCMLGFKRRGMLVNHMAKRHPDIRIESIPELNLPIIKPQSLFYCQHCTKVYKSNAKRKAHILKNHPGLELPPSARNTSEPAQIHARTIGSLKTEPQRCQWCYKQYASRNRLLLHYRKSHPDKQIIDNIKQEFTQVEPLIIDNYRPPQSPENKLLKLSSAALELSSIEDRKFFDFLNERSQEPNSLATTGSLEDNANGFSKVDVNFKVVDGEFSETSSNAEINRLPQLFEESIACI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01431330;
90% Identity: iTF_01431330;
80% Identity: -