Basic Information

Insect: Thereva nobilitata
Gene Symbol: prdm10
Assembly: GCA_963855945.1
Location: OY979698.1:12562802-12565146[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.6e-05 0.019 17.1 0.3 2 23 147 168 146 168 0.96

2 11 0.0002 0.049 15.8 2.3 2 23 203 224 202 224 0.97

3 11 9.6e-06 0.0023 20.0 1.5 2 23 247 268 246 268 0.97

4 11 6.4e-06 0.0015 20.5 0.1 1 23 276 298 276 298 0.99

5 11 0.39 94 5.5 1.6 1 23 303 325 303 325 0.92

6 11 0.0074 1.8 10.9 5.6 1 23 331 354 331 354 0.96

7 11 0.093 23 7.4 0.8 1 23 359 381 359 381 0.91

8 11 9.7e-06 0.0024 20.0 1.5 1 23 387 410 387 410 0.94

9 11 0.00034 0.083 15.1 0.6 1 23 461 484 461 484 0.97

10 11 0.0019 0.47 12.7 3.8 1 23 506 529 506 529 0.97

11 11 0.053 13 8.2 1.7 2 23 561 583 560 583 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.6e-05	0.019	17.1	0.3	2	23	147	168	146	168	0.96
2	11	0.0002	0.049	15.8	2.3	2	23	203	224	202	224	0.97
3	11	9.6e-06	0.0023	20.0	1.5	2	23	247	268	246	268	0.97
4	11	6.4e-06	0.0015	20.5	0.1	1	23	276	298	276	298	0.99
5	11	0.39	94	5.5	1.6	1	23	303	325	303	325	0.92
6	11	0.0074	1.8	10.9	5.6	1	23	331	354	331	354	0.96
7	11	0.093	23	7.4	0.8	1	23	359	381	359	381	0.91
8	11	9.7e-06	0.0024	20.0	1.5	1	23	387	410	387	410	0.94
9	11	0.00034	0.083	15.1	0.6	1	23	461	484	461	484	0.97
10	11	0.0019	0.47	12.7	3.8	1	23	506	529	506	529	0.97
11	11	0.053	13	8.2	1.7	2	23	561	583	560	583	0.97

Sequence Information

Coding Sequence: ATGAGTATAATCCGCACGATAAATACTTGGTATTCCCAGAATGCACTCTtACTACAAGTTCTTGCTAAGAAAGAGATTCCATCACGTGCAAAATTTGGACCATTTGAAGGCGAGATACATTATAACATTACCATTTCTTCAGAATACTCAAGCCAATACCCAATACTATTTTTGCCAGACTCAAAAATATTAGCTGTCTCGAATGAAAACACTTCAAACTGGATGAGGTTTGTCCGATTAGCTCAAACATACTGCGAACAGAATCTACTTCTATTTGAAGACAATGGCAAACTCTACTTTAAATGTTGCCGAACAATAAACGCCAAAGAAGAACTTAAAGTTGGATATAGTGAAGAGTATGCACAAATATATAATCTTAGATACTTAACACCAAATGAACAAGAAATCCGTGAAATTTATGAGAAAGACAATCCATGGGTTTGTTTTGAATGTGATCAACGGTTTCCAACATCAAATGATATGCAGAAGCATCTTAATATTCATGAAGGAGATGAAAATGCTGATGTTGTTGGCAACAAACGCAAGAAGAAAGTACGAAAAAAGAAGATACATTTGAAAAGAGTTGATGTACGTAAAAATTCAAGTAGATGTTGCTATTGCCTTAAAGTTTTCATGACTAGCGTTAGCTTAAAGAAACATATGGCAGTTCATCTAGCTGAGAAAAGAAATGGAAAGAGCTTATCGAAAAATACTGGCTCTGAGTCGAATTATGCCTTAAAGTGCAATGTTTGTAATAAGCGTTTTAGTTCCGAAGAGAAATTAAagAATCATCGATTGATacatattaaaaatgatattaagcCCTATCAATGTCCTGACTGTCCAGCAAGTTGCTCTACACCAGCTGCATTATATGCTCATGTCAGGAGCCACACAAATCCGCGATTTACTTGCATCTTTTGTTCAGAATCCTTTAAGCATGTTATCGAGTTTAAAAATCATGTAGCTTTACACTCAGTAAATGGATATTTTGattgtaatttttgtaaaaagAAATATCGACAATATTACTTAGTCCGAAAACATGTACGAATTTGTCATTCTTCCCAAAAATATTCATGTGATATCTGTGATCGTCAATTTCTTAACTTATACATTTTGAAAAGACATAAAGTAAGCCATTCTGAAAAGCGTGAATTTCTCTGCTCTGAATGCGGAAGgcaatttaaaagaaaagataAACTACGAGAGCATATAACGCGAATGCATTCCGAGCATAAGAAAtcaaattcaaaaaagaaaCGAATTCAGAAAGAAAATCCAGTTAGTGATGGATCGCAATATCTCGAGCTCAGTCCAAAGAAGGTAAAGCCAACAAAAGCAATAAAGAATCACTCAAACGATTATCattgttatatatataaatgcaaTGATTGTATGCTAGGCTTTAAGCGGCGTGGAATGCTAGTTAATCACATGGCAAAGCGACATCCTGATATTCGTATAGAGAGCATACCAGAGCTTAATTTACCAATTATAAAGCCACAATCACTATTTTACTGCCAACATTGTACCAAAGTCTATAAAAGTAATGCCAAAAGAAAAGCACACATACTTAAAAATCATCCAGGTTTAGAGCTACCACCATCAGCACGAAATACTTCCGAACCAGCACAAATTCATGCTAGAACAATtggtagcttaaaaactgaacCGCAACGTTGCCAGTGGTGCTACAAGCAATACGCATCGAGGAATAGACTACTCTTACACTATCGTAAATCACATCCTGATAAACAAATAATAGATAATATTAAGCAAGAATTTACACAAGTAGAACCTTtgataattgaaaataattataGACCACCACAATCTCCTGagaataaacttttaaaattatcttcGGCTGCTTTAGAATTATCCTCGATTGAAGATAGGAAATTCTTTGATTTCTTAAATGAAAGATCACAAGATCCCAACTCTTTGGCTACAACCGGTTCTTTGGAGGATAACGCGAATGGTTTTTCAAAGGTTGATGTTAATTTTAAAGTTGTTGATGGTGAATTTTCTGAAACATCCTCAAATGCCGAAATAAATAGACTTCCACAACTTTTTGAAGAGTCTATTGCTTGCATTtag
Protein Sequence: MSIIRTINTWYSQNALLLQVLAKKEIPSRAKFGPFEGEIHYNITISSEYSSQYPILFLPDSKILAVSNENTSNWMRFVRLAQTYCEQNLLLFEDNGKLYFKCCRTINAKEELKVGYSEEYAQIYNLRYLTPNEQEIREIYEKDNPWVCFECDQRFPTSNDMQKHLNIHEGDENADVVGNKRKKKVRKKKIHLKRVDVRKNSSRCCYCLKVFMTSVSLKKHMAVHLAEKRNGKSLSKNTGSESNYALKCNVCNKRFSSEEKLKNHRLIHIKNDIKPYQCPDCPASCSTPAALYAHVRSHTNPRFTCIFCSESFKHVIEFKNHVALHSVNGYFDCNFCKKKYRQYYLVRKHVRICHSSQKYSCDICDRQFLNLYILKRHKVSHSEKREFLCSECGRQFKRKDKLREHITRMHSEHKKSNSKKKRIQKENPVSDGSQYLELSPKKVKPTKAIKNHSNDYHCYIYKCNDCMLGFKRRGMLVNHMAKRHPDIRIESIPELNLPIIKPQSLFYCQHCTKVYKSNAKRKAHILKNHPGLELPPSARNTSEPAQIHARTIGSLKTEPQRCQWCYKQYASRNRLLLHYRKSHPDKQIIDNIKQEFTQVEPLIIENNYRPPQSPENKLLKLSSAALELSSIEDRKFFDFLNERSQDPNSLATTGSLEDNANGFSKVDVNFKVVDGEFSETSSNAEINRLPQLFEESIACI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01432507;
90% Identity: iTF_01432507;
80% Identity: -