Tnob001638.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979694.1:32382497-32388881[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.2 1e+03 2.2 6.8 2 19 304 321 303 323 0.93 2 18 0.037 9 8.7 3.0 2 23 335 356 334 356 0.93 3 18 0.078 19 7.7 0.2 3 23 365 386 364 386 0.95 4 18 0.12 28 7.1 0.3 3 23 394 414 392 414 0.89 5 18 0.00042 0.1 14.8 2.6 1 23 420 442 420 443 0.96 6 18 0.00013 0.032 16.4 3.5 1 23 449 471 449 471 0.98 7 18 0.067 16 7.9 0.6 3 23 482 502 480 502 0.95 8 18 0.0023 0.56 12.5 0.3 1 23 519 541 519 541 0.94 9 18 0.025 6 9.3 1.1 1 23 547 569 547 569 0.98 10 18 0.021 5.2 9.4 1.4 1 23 585 610 585 610 0.95 11 18 0.0053 1.3 11.4 1.3 1 23 615 638 615 638 0.95 12 18 0.00094 0.23 13.7 0.5 1 23 643 666 643 667 0.94 13 18 0.0063 1.5 11.1 2.8 1 23 671 694 671 694 0.97 14 18 2.9e-05 0.0069 18.5 0.5 1 23 697 720 697 720 0.97 15 18 0.028 6.9 9.1 4.5 1 23 726 749 726 749 0.89 16 18 1.4e-05 0.0033 19.5 0.9 1 23 755 777 755 777 0.99 17 18 5.5e-05 0.013 17.6 0.5 1 23 783 805 783 805 0.94 18 18 0.021 5 9.5 0.1 1 23 811 835 811 835 0.97
Sequence Information
- Coding Sequence
- ATGCCCCCAAAACGAAAGAGAGGTCGTCCTAGGAAAGCAAAAGGGCCGAATTGCATACGCTGCTTAGCCAATTTAGAAAAGCCCtatcaattaatttttgatgAGACGGGGATTGAACTTGAACTACAAAAACTTTTGTCAGAATGTTTCAAATTAGATGTTGTTCATATGGAATCTGAGGAACAAGCGCTATGTGATACATGTCTTAATGAATTAATAGATATTTATGACATACTACAGAAAGTTAAGGTGGAAAAGGAAGATGAGCCAAAACAAATGTACGGTTCCAAGGTTGAACCATTACCGACCGTTGCTGACGTTAAGAGTGAAGAAGAATCTGATATTACCGAAACGGAAATCACATTAAACGGTAAAGAAGCAAATAAGTTAAATAAAGAGGAATTTTCTGAAGAACGATATGATAAAAAAGAGTATAGGCATGAAAATAACACACAAACGGAAGAAAATGAAGAATTAGAAAGAGAATCGGATGATTGTGATCCGGGAGAGTATATCGTATATAATATACAGAATATATATAGGAAGAGATTAGAAATATTCGTACAATTGCTCGATATGATTAATTGTTACTTAACTAACAAATATACTTTGCTCTTTTCTTTGCATGAGAAAGTTTATGATAACGATCCAGAAGAATTTGAAGATGTGGACTATTTGGAAGACAATGATGAAATAAAGGATTTCAAAGCTTACAAAAAgaaaATATGCTCTGCGGGACTAAACACACATTTAAATGTTATTGAACATATAAAAACATCACACTGTGTTGAAGACTTCGCTTATCCTTGCATTGTGGACAGCAAGTGTGAACCATTAAAATCTTGCGATGATTTGGCGTATCATCTAGTTTTTCAACATTATGATCTAAAAAACTTAACAATATATTGCTGTTGTCCGGAATGTAACATGAATTTTAGCGATTTTCCAACTTATAATAAGCATAATTGTTTCCGAAAAAGAGATACTTCTAGAATACAAACAGAGTGCGAAAATTGTGGAAAGaagtttaattcaaataaaagATATCGATTTCATATGCAATTTCATTTGGAAAATCATCGCCCCAAAGCATGTTTTATTTGTGATAAGAATATAAGTAAAGAAAAGgatttgtatgaacatttaaTGTATGGCCATGAAAAGGATCTTGACACGACATGTATTTTgtGTGACAAGAAATTTGGaacaattgaaaattataaaaatcatgAAATCTTACATAAAATACGGCGACCGTATAAGTGTAAATTTTGTGGAAAGACGTACCTTTACAAACAATTGCTGCAGGCACATATTCTTATACATCACAGTAATGGAAATCCTTTCAAATGTCATATTTGTGGAAAAGTCTTATTTAAGAAAACGTTCCTTAATAAACATATTTTAAGCCATCAACAACCCAATCCGGCAGAAGTTTCTTGTTGCAATGTTTGTGGTTTAGTATTCGAGAGCGATGCATCAACTTCAgcaCACTTAAAACAGCACAAAAGCATCCCTGACGCCAATATTATCTTAGAAACGTTGGAAATAGCATATTGTTGTGAATATTGTGAAATGGCTTTCAGCTCGATTGAGAGTTTAGTTGCACATAGAGATGGTCATGAAGATAAAACTATATTCTACTGTGATTTATGTCCTTTAACTTacaatgaatataaaaaattagttaCACATAAATTAACTCACATAAACCATGGTGGTAGAAGATCTAAATTCCCACTTATGAGACATTACGTTTGTGATAAACCGGGTTGTGATCTTACTTACTTGCAGTGGAGCAGTCTCAAGTCTCATAAAAGACATAAACATCGAATTGATGACTTCTTTTGCCCTCGATGTTCTGAACATTTTCAAGATGAGGATTCTTACAAGATTCACATTCGTGATGACCATTCTGAAGGAGTATATGATTGTCAATTTTGCGACAaagtttttaaaactaaaatggcTGTGGCTGTACACGTAGCAAGAATACAccacaaaagTCGGTTTAAATGTAGCGGATGTACTTTAACTTTTCAAACTGAAAAATGCCTCCAAGATCATAAAGAAACAGCCCATGCCCATTTTGCATGCGACATTTGcggtaaaatattaaaaaacaaaaaaaattacaatgttCACAAAAGAATGGTTCATGATAAGGAACTTCGATTCTTTTGCACATATTGCGAAAAAggcttttttaataaatgtgaCTTGACTGATCATGAACATGCTgtgcatgaaaaaattaaaagatatcAATGCAAACTTTGTGATTATTCTGCTGTTTATAAGGATTCCTTAACAATTCATATGCGTAAACATGAAAATGACAATCCTTATGTTTGCCAGCTCTGTGGTAAAGCTTTTCGTAGAAAATATGGTTTAGTACTACATGACAGACGGCATAGAAATATTCGAGAttttatttgtcCGTACGGTTGTGATTCGTCTTATCCAAACCAAGGAATTCTAAATTCCCATATACGATCTAAACATCAAAATGGTGGGAATAAGAGACGTAAACGGATTTCATCAAATAAACTCAAAAGACCTAGATTTGATGCTTTACCATCTTATCATTTCACTGACGATGATGATGGATTAAACGATGATGACATAGGATTAACAAAGAATAATGTTGAAGATAATCCAAATGAATCAAATGATGAAAGtcataaatttcaactaaagGTAGAAGACCCTGAAGAGAAATATATATCTACAAACGCTGATCTATTTCTGGAGGATGATGATGGAATAAATAATGAGCATGAACtggaaattcaaataaataattataatgaaGATGATCCTGATGGACCTGTTGAATATATTATTGAagaaattccaaatttaataGAAGATACAAATCAAATTGAAGCAGTAACTTTGGAGGAAAATCAATTTGATCATGATTATATTCTTAAAATAAAGCCAGAGAAAGATCAATTTGAACATCAATTAAATAGCGAAGTGCAACAGTGA
- Protein Sequence
- MPPKRKRGRPRKAKGPNCIRCLANLEKPYQLIFDETGIELELQKLLSECFKLDVVHMESEEQALCDTCLNELIDIYDILQKVKVEKEDEPKQMYGSKVEPLPTVADVKSEEESDITETEITLNGKEANKLNKEEFSEERYDKKEYRHENNTQTEENEELERESDDCDPGEYIVYNIQNIYRKRLEIFVQLLDMINCYLTNKYTLLFSLHEKVYDNDPEEFEDVDYLEDNDEIKDFKAYKKKICSAGLNTHLNVIEHIKTSHCVEDFAYPCIVDSKCEPLKSCDDLAYHLVFQHYDLKNLTIYCCCPECNMNFSDFPTYNKHNCFRKRDTSRIQTECENCGKKFNSNKRYRFHMQFHLENHRPKACFICDKNISKEKDLYEHLMYGHEKDLDTTCILCDKKFGTIENYKNHEILHKIRRPYKCKFCGKTYLYKQLLQAHILIHHSNGNPFKCHICGKVLFKKTFLNKHILSHQQPNPAEVSCCNVCGLVFESDASTSAHLKQHKSIPDANIILETLEIAYCCEYCEMAFSSIESLVAHRDGHEDKTIFYCDLCPLTYNEYKKLVTHKLTHINHGGRRSKFPLMRHYVCDKPGCDLTYLQWSSLKSHKRHKHRIDDFFCPRCSEHFQDEDSYKIHIRDDHSEGVYDCQFCDKVFKTKMAVAVHVARIHHKSRFKCSGCTLTFQTEKCLQDHKETAHAHFACDICGKILKNKKNYNVHKRMVHDKELRFFCTYCEKGFFNKCDLTDHEHAVHEKIKRYQCKLCDYSAVYKDSLTIHMRKHENDNPYVCQLCGKAFRRKYGLVLHDRRHRNIRDFICPYGCDSSYPNQGILNSHIRSKHQNGGNKRRKRISSNKLKRPRFDALPSYHFTDDDDGLNDDDIGLTKNNVEDNPNESNDESHKFQLKVEDPEEKYISTNADLFLEDDDGINNEHELEIQINNYNEDDPDGPVEYIIEEIPNLIEDTNQIEAVTLEENQFDHDYILKIKPEKDQFEHQLNSEVQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432474;
- 90% Identity
- -
- 80% Identity
- -