Tnob037524.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979696.1:129546784-129548901[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.065 16 7.9 3.3 1 23 36 58 36 58 0.96 2 18 0.0061 1.5 11.2 3.6 1 23 161 183 161 183 0.98 3 18 6.8e-08 1.6e-05 26.8 2.2 1 23 189 211 189 211 0.99 4 18 0.0001 0.025 16.7 2.5 1 23 219 241 219 241 0.96 5 18 2.2e-06 0.00053 22.0 0.4 1 23 247 269 247 269 0.98 6 18 0.0031 0.74 12.1 4.2 1 23 277 300 277 300 0.96 7 18 3.1e-05 0.0076 18.4 0.5 1 23 308 332 308 332 0.91 8 18 0.00024 0.058 15.6 0.6 2 23 339 360 338 360 0.95 9 18 0.0011 0.27 13.5 0.5 3 23 370 391 369 391 0.91 10 18 0.00068 0.17 14.2 1.5 1 23 391 413 391 413 0.98 11 18 0.0024 0.59 12.4 5.4 1 23 419 441 419 441 0.96 12 18 0.0004 0.098 14.9 1.2 1 23 443 465 443 465 0.98 13 18 0.4 98 5.4 3.1 1 23 471 494 471 494 0.93 14 18 0.0023 0.56 12.5 0.5 1 23 535 558 535 558 0.93 15 18 0.00085 0.21 13.9 1.7 1 23 566 589 566 589 0.96 16 18 0.0032 0.77 12.1 4.6 1 23 597 619 597 619 0.96 17 18 0.00027 0.065 15.4 0.5 1 23 625 648 625 648 0.92 18 18 6.4e-06 0.0015 20.5 3.1 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- ATGGATTCAATCAACGCAGAGAAATGTAGTCTTCTCTCAGAGAAGTGTATAACAAATGATATTGCACATTGTAAGAAAGGAAAACTAGCCCTAGGAAATCTGGATTTCCATTGCGATCTATGCGATTTAGAATTTCAAGATTTAACAAAACTATTTAAACATAACAAACAACATCTCCAGCACTCTCAAGCTGGCTTCTTAAAACCAGGAAGTAAGTTTAACTTCTGTCCATTTTGTGTATGTCGCTTTGATGGTCACAACGATGAGGGAAGATCTGATCTTGGAATACATAAGACAGAAATTTCATTGCTTTCTTTTATTGAATGCCGATATTGTTTAGCAAGACCAAAAACTTTCGATGATTTACTTGAGCATTATAAGGATATACATAAAAATCGAACaccatttttcgattttttcctAAATTCAAGCACATCTTTGCCAGGTATTAAAATCTATTCAGGTAAGAAAAAACATCCATTTCAATGTGATATTTGTTTGCGTAATTTTTCAACAAGGGGTTACTTAAAATGTCATAGAATAACGCATAGTGGTAAGAAACCTTATGAATGTGAGCATTGCGATAAGAAATTCTCATATCCAACAAACTTGACGGATCACATGAAAGTCCATACAAGATCTGATGCAAAACCATTTCAATGCAATATGTGCCCTAAGAGGTTTTCAAAGAAGCAATCACTTGCATATCATCGTTATTTACATGCTGGCGACAAACCATATGTTTGTAAACTTTGTCCAAAGAAATTCTCTGCTccagaatatttaaaaagaCACCTGAATGTACATAATGATAGTTCGGATAATCCGCACAAATGTAATCGCTGTGGAAAAATATTTGCGTGTAGTTACAATGTAAAAAGGCATATAGAAAAAATTCATGTAAATCCAGGTCCTGCATCTTATGCTTGTGACTATTGCGATAGGACATTTGAAAAGAGAGTTTACTTAGTAAGACATCTAAAAAGCTTAGCTCATAACGAAATTAAAAGACTTAAATGTGATTACTGTGAAAAGACTTTTGCTTTTAAGAATTTGCTAGATGATCATATGATATTTCATAGCAATGAAAATTTAGAAATGCCGACTTGCATATACTGcagtaaaaaattcaacaagCCAGGCTACTTACGCCGACACATTGTTATGAATCATAAGTGTGAATTTTGTCCAAGAATCTATCAAAATCGAACTGCCTTAAACTCACATCGTCGTGAGCATGTTGGACCTGGCCCGCACTCGTGTTACTATTGTGATACAAAATTCACAAACACTAAGGAATTTGTAAAACATATTAAGTTTCATACTTACAAGTGTGATTTATGTACAGAAACATTCTCAAAAGAAATGGATTTGAATTTACACAGATTTATGCACTCTGGTGAAAAAATGCATGCATGCAGCCTATGCTCTAGCCGTTTCATGCATTCAAATCGCTTACGTGCTCACTTAAAAGATGTTCATGGAGATATTGAAGGAAGTTTAAGCTTATGGTATGATAATCCAATCCAAAATCAAGATCTTCCACAGGCAGACGATATTCAAACAGAACCAGATTACTTAACATTGCCCAATGAAACAggatttttttgcaaagtgTGCTCCACTAAATTTCAGGACTTAAAAGACTTGCGATTGCATATTATCGAAGCTcatattaaaaatgaagaaaaaacctACAGCTGCAGCTACTGTGCTCAATCCTTTAAGAAAATGATTGATTTAAATAAGCACAAAAGAGAATCACATGCTGACATTGTTGAAAAGCCGCACAAATGTGATATGTGCTCAAAGGAGTTTTATAATAAACAAGCATTAAGATATCATAGATATAATCATACTGGTGAGAAGCCATTTCCTTGTGATCAATGTGGAAGGAACTTTACTCGCCCGTATATTTTACAGAAGCATAAGGAACAGGTTCATACGCCTCCTAGCTTGAGAAGTCATCGATGCAATTTATGCCCGAAAAGTTTTGTGtcgaagttttttttggaaaaacattTACGAGTGCATAAAATAAGAGACGAAAATGGAGGAGTTTGCAAAAGACAGAAATATCCAACTAAATATAAAAGTATtgataaagaagaaaaatga
- Protein Sequence
- MDSINAEKCSLLSEKCITNDIAHCKKGKLALGNLDFHCDLCDLEFQDLTKLFKHNKQHLQHSQAGFLKPGSKFNFCPFCVCRFDGHNDEGRSDLGIHKTEISLLSFIECRYCLARPKTFDDLLEHYKDIHKNRTPFFDFFLNSSTSLPGIKIYSGKKKHPFQCDICLRNFSTRGYLKCHRITHSGKKPYECEHCDKKFSYPTNLTDHMKVHTRSDAKPFQCNMCPKRFSKKQSLAYHRYLHAGDKPYVCKLCPKKFSAPEYLKRHLNVHNDSSDNPHKCNRCGKIFACSYNVKRHIEKIHVNPGPASYACDYCDRTFEKRVYLVRHLKSLAHNEIKRLKCDYCEKTFAFKNLLDDHMIFHSNENLEMPTCIYCSKKFNKPGYLRRHIVMNHKCEFCPRIYQNRTALNSHRREHVGPGPHSCYYCDTKFTNTKEFVKHIKFHTYKCDLCTETFSKEMDLNLHRFMHSGEKMHACSLCSSRFMHSNRLRAHLKDVHGDIEGSLSLWYDNPIQNQDLPQADDIQTEPDYLTLPNETGFFCKVCSTKFQDLKDLRLHIIEAHIKNEEKTYSCSYCAQSFKKMIDLNKHKRESHADIVEKPHKCDMCSKEFYNKQALRYHRYNHTGEKPFPCDQCGRNFTRPYILQKHKEQVHTPPSLRSHRCNLCPKSFVSKFFLEKHLRVHKIRDENGGVCKRQKYPTKYKSIDKEEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432444;
- 90% Identity
- iTF_01432444;
- 80% Identity
- -