Tobe021960.1
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_947578465.1
- Location
- OX387921.1:1488117-1503745[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9e-63 2.2e-58 198.4 6.6 1 187 116 294 116 330 0.90 2 3 3.7e-08 0.00089 19.0 2.9 222 270 482 528 472 546 0.75 3 3 1 2.4e+04 -8.9 14.7 1 51 548 600 548 623 0.44
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAATGGCTACTCCTGATAACAGTGACGAGGAAAGTGGAGATGCCTTTACCGACGGAGATTTCGGGGACTCTGATGTTGAAGCCGATCTGGAATGCAATGATAACAAGCCCCCTGTCCACGAAACTATAAATGAAGAAGTCCAAAAGAAGCTAACTAACGGCAATTCTAGCAATGGGTTTAAGGAACCTCCGGAAGAGCCTAAAGTTAACGGACGTGACCAATCAATTGATGTGGAAAATTGCAGTGACATAGCAGCAGATGTAAGACGAGATTCACACGGGGATCAAAACCCTTCGATTGTTGGAATTATTGGAGATCAGCACAGTCATGCAGAACAGCGCCTGGCTGCGCGGCGGGCGGCGCGGGCTGAGGCCAGAGAAATCCGCATGAGGGAGCTAGAGAGACAACAACGGGAGCAGGAGGACCATGCTGACAAGGCCTATGATATGTACGCGGAGACAGTCGGCAGGCGAGGCCCTCGGCTGGCAGCTCTTAGTCCGGCCGCGGTGCTCTCGCCGCGACGGAGCTCAGAGGACTCTGCGGATGACACCTTTAGCATCAAAGACTTGAGGCATGAACTGAAAGAAGTTGAAGAGAAGTTCCGCAAAGCGATGATTCTGAACGCGCAGTTGGACAACGACAAGGCATCGCTCGGCTATCAGCTGGAACTGCTCAAGGACAGGATCGATGAGCTGCAAGAGGAATACGCACAATTACAGCGCGAGCACCGCGAGAAGTGTTCCGTGCACGAGCGGCTGAAGCGCGAGCACGCGTCCGTGTCGCGCGAGCTGGTGCAGGCGCGGGACGCCGGGCGCGCGCGGGACGCGGCGGCCGCGGCGGCGGGCTTCGTGTTCGCGGAGGCCGCGCCCGCGCCCGGGCACGGGGCCGCCGCGCCGGGCTTCGGAGCCGTGCCGCCGCTCGCGCTGCTCTCGCACGAGGCCGACCTGCTGCTCGGCGAGCCGGACGCCACGCTAGGTAACCACCCCCCACAGCCCACACGCAAGGGACGCGGCGGCGGGCTTCGTGTAACCACCCCCCACAGCCCACACGCAAGGGACGCGGCGGCGGGCTTCGTGTTCGCGGAGGCCGCGCCCGGGCACGGGGCCGCCGCGCCGGGCTTCGGAGCCGTGCCGCCGCTCGCGCTGCTCTCGCACGAGGCCGACCTGCTGCTCGGCGAGCCGGACGCCACGCTAGGTAACCACCCCCCACACGCAAGGGACGCGGCGGCGGGCTTCGTGTTCGCGGAGGCCGCGCCCGCGCCCGGGCACGGGGCCGCCGCGCCGGGCTTCGGAGCCGTGCCGCCGCTCGCGCTGCTCTCGCACGAGGCCGACCTGCTGCTCGGCGAGCCGGACGCCACGCTAGGTAACCACCCCCCGCACGCAAGGGACGCGGCGGCGGGCTTCGTGTTCGCGGAGGCGGCCGGGGACGACGTGCGGTTGCAAAACCTGGTATCCTCGAAGCAGTCTCTGGAATCAGAAGTGCGCAAACTGAAGCTGACGCTGAACGAAGAACGCGCCGCCCGCCAGAACGGCGTCGCCAACCATCACGACGAACAGTATGAAAATGAACTGGATAGCGTCCGCAAGGCGCACGTGGAGGCGAAGGGGCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGCTGGCGCGGCTGGAGGCGCAGCTGCAGCGGCTGCGCGCGCGGCACAACGAGCGCGACGACGAGGAGGAGCTGCTCAAGCAGGAGCGCAGGAAACTGCAGCGAGAGGCGCGAGAAGCTATGAATCGCGTGGAAGAGTTGGAGACAGAAAACAGCCACCTCACCAAGAGACTTGACAAACTGAAGAACGCCAAATCTGCACTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEMATPDNSDEESGDAFTDGDFGDSDVEADLECNDNKPPVHETINEEVQKKLTNGNSSNGFKEPPEEPKVNGRDQSIDVENCSDIAADVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSVHERLKREHASVSRELVQARDAGRARDAAAAAAGFVFAEAAPAPGHGAAAPGFGAVPPLALLSHEADLLLGEPDATLGNHPPQPTRKGRGGGLRVTTPHSPHARDAAAGFVFAEAAPGHGAAAPGFGAVPPLALLSHEADLLLGEPDATLGNHPPHARDAAAGFVFAEAAPAPGHGAAAPGFGAVPPLALLSHEADLLLGEPDATLGNHPPHARDAAAGFVFAEAAGDDVRLQNLVSSKQSLESEVRKLKLTLNEERAARQNGVANHHDEQYENELDSVRKAHVEAKGRAARAEAEAALQAAALARLEAQLQRLRARHNERDDEEELLKQERRKLQREAREAMNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -